Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 2e-15 >seq5 Length=14578851 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||||||||| || || ||||| |||||||| ||| | | | | |||| || Sbjct 4175963 AACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTC 4175904 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || ||||| | ||||| ||||| ||||| ||| |||||||||||||| Sbjct 4175903 GAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTG 4175844 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || || || | ||| || || || || ||||| || Sbjct 4175843 GATCTTGGCCTTGACATTCTCGATTGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTT 4175784 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||| || || || ||||||||| Sbjct 4175783 TCCGGTCAAAGTCTTGACGAAGATTTGCATA 4175753 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || || || || || || || |||||||| ||| |||| | | | || || Sbjct 1551614 AACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 1551673 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | ||||| | || ||||| |||||||||||||||||| Sbjct 1551674 GAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTG 1551733 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || || |||||| || || || | || ||| || || Sbjct 1551734 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTT 1551793 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 ||| |||||||| || || || |||||||| ||||| Sbjct 1551794 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAA 1551831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || ||||| ||||||||||| || |||| | ||||| ||||| Sbjct 4175454 ATGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGACAGGGTTCTACCATCTTCCAATTG 4175395 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | || | | ||||||||| ||| ||||||||||| || || || Sbjct 4175394 CTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTT 4175335 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || |||| || || || | ||| || || | || ||||| || || || Sbjct 4175334 GGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACTTCGAGAGTGATGGTCTTTCCAGT 4175275 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||| || || || || ||||| Sbjct 4175274 CAGAGTCTTGACGAAGATCTGCAT 4175251 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || ||||| || ||||| |||||||||||| ||| | | | || || Sbjct 4175004 AACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTC 4174945 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | || | | ||| ||||| ||||||||| |||||||| Sbjct 4174944 GAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTG 4174885 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| ||| | || || || || | ||| || || | ||| || || || Sbjct 4174884 AATCTTGGCTTTGACATTCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTT 4174825 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || || ||||| Sbjct 4174824 TCCGGTCAATGTCTTGACGAAGATCTGCAT 4174795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390401452595