Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5 111 1e-19 >seq5 Length=14578851 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| ||||| || ||||||||| | || || ||| || || || ||||| Sbjct 4174991 GTAGACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGCTTTCCG 4174932 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| |||| | || |||||| || || || || |||||||||| | ||| | | || || Sbjct 4174931 GCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGT-CTTGAATCTTGGCTTT 4174873 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | |||| |||||||| | |||||||||| ||| | ||| || ||||||| || Sbjct 4174872 GACATTCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAATGT 4174813 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 4174812 CTTGACGAAGATCTGCAT 4174795 Score = 111 bits (122), Expect = 1e-19 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414 || || |||||||||||| |||||| || |||| || || |||| | | ||| Sbjct 11384197 GACGCTGTCGCCATTGAGCAGGAGTTCCTCACCGAAGCCCTCCCCGTTGACATGATCGGA 11384138 Query 47415 ATGAAC-GCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA 47473 |||||| || || ||||| |||||||||| || |||||||| | |||||| | Sbjct 11384137 ATGAACTGCCGAC-TGATGTCCCAGTACATCGAGTTCGTCGCCGATCATCTGCTCCAGGA 11384079 Query 47474 GCTAAAGTATCCCA--AGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531 ||| | || | | || | ||| || | |||||||||| || || ||| | ||||| Sbjct 11384078 GCTC--GGATGCGATAAGCTGTACAACGTCAAGAATCCATTTGACTTCATGGAGAACATC 11384021 Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 ||| |||| || ||||||||||| |||||||||||||| Sbjct 11384020 TCGATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGT 11383983 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || || || ||||| ||| | || || ||| || Sbjct 1551615 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 1551674 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||| ||| ||||||||| ||||| || || || || || |||||||| | Sbjct 1551675 AGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 1551734 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| ||| || | ||||||||||| || | || || Sbjct 1551735 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTTA 1551794 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || |||||||| || || || || |||||| || Sbjct 1551795 CCCGTCAGAGTCTTGACGAAGATTTGCATGACT 1551827 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || |||||| | |||||||||||||| || || || || || ||||||||| ||| || Sbjct 4174663 TTACCAGCGAAAATCAATCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTG 4174604 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 |||| | |||| ||||||| | |||||||||| ||| | ||| || |||||| Sbjct 4174603 GCTTTGACATTCTCGATAGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTC 4174544 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 | || || || || |||||||| Sbjct 4174543 AATGTCTTGACGAAGATCTGCAT 4174521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || || || ||||| || | || | ||| || Sbjct 4173718 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTC 4173659 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| ||| |||| | || |||||| || || || || ||||||||||| Sbjct 4173658 AAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 4173599 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| |||| | |||| ||| || | | ||| || || | ||| | ||||| Sbjct 4173598 GATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAAGGTGATAGTTTT 4173539 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||||| || || || |||||| Sbjct 4173538 TCCTGTCAACGTTTTGACGAAGATTTGCATG 4173508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498618640080