Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 122 8e-23 >seq5 Length=14578851 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || ||||| || ||||| ||||||||||| || ||||| Sbjct 4175480 ATACCTCCACGGAGACGAAGGACAAGATGGAGTGTTGACTCCTTTTGGATGTTGTAATCC 4175421 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| || ||| |||||||| ||||| ||| | || | || || ||||| || Sbjct 4175420 GACAGGGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGT 4175361 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||| || || || || | ||| | |||||| |||| ||| Sbjct 4175360 GGGATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCG 4175301 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| | || || || || ||||| || || || || ||||| Sbjct 4175300 ACTTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 4175251 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || ||||| || || || ||||||||||| || |||||| Sbjct 4175024 ATACCTCCACGGAGGCGAAGAACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCG 4174965 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | ||| ||||| ||| | || | || |||||||| || Sbjct 4174964 GAAAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGT 4174905 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || |||||||| || ||||| || | |||||| |||| ||| Sbjct 4174904 GGAATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTCTCGATGGTGTCCGAAGCTTCG 4174845 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | ||| || ||||| | || || || || || ||||| Sbjct 4174844 ACTTCGAGGGTGATCGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 4174795 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || ||| || || ||| || | ||| Sbjct 1551621 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGC 1551680 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||||| ||||||||| || ||||| ||||| || ||||| || || Sbjct 1551681 TTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTA 1551740 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||| ||||| | |||||||||||| | || || || || || Sbjct 1551741 GCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTTACCCGTC 1551800 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || |||||||| Sbjct 1551801 AGAGTCTTGACGAAGATTTGCAT 1551823 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | ||| | || || || || ||||| ||||| || || || Sbjct 4175252 ATTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCC 4175193 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || ||||| ||| | |||||||||||||| || || Sbjct 4175192 GAGAGGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGT 4175133 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| || | ||||| |||| ||| Sbjct 4175132 GGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCAATAGTGTCCGAAGCTTCG 4175073 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || ||||| || || || || || || ||||| Sbjct 4175072 ACCTCGAGGGTGATAGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4175023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001126435320