Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq4 102 1e-16 >seq5 Length=14578851 Score = 107 bits (118), Expect = 2e-18 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300 || ||||||||||||||||| ||||| ||||||| ||| |||||||| || |||||| Sbjct 11383983 ACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCATGAAGTCAAAT 11384042 Query 127301 GGGTTCTTTGAGTTCCA-AATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGAC 127359 || ||||| ||| | | | | ||| || | || | ||| ||| |||| | ||| Sbjct 11384043 GGATTCTTGACGTTGTACAGCTTATCGCA-TCCGAGCTCCTGGAGCAGATGATCGGCGAC 11384101 Query 127360 GTACTCAATGTACTCAGACATCTTCTCAG-AGTTCATACCGATGAGGTTACATGGGAGCG 127418 | |||| ||||||| |||||| || | ||||||| ||||| | || | ||||| | Sbjct 11384102 GAACTCGATGTACTGGGACATC-AGTCGGCAGTTCATTCCGATCATGTCAACGGGGAGGG 11384160 Query 127419 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTC 127455 | || || |||| ||| ||||||| | ||||| || Sbjct 11384161 CTTCGGTGAGGAACTCCTGCTCAATGGCGACAGCGTC 11384197 >seq4 Length=16627154 Score = 102 bits (112), Expect = 1e-16 Identities = 255/384 (66%), Gaps = 9/384 (2%) Strand=Plus/Plus Query 176602 GAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATC 176661 ||||||||||||||| | ||| | | |||| || |||||| || ||||||||||| || Sbjct 8906757 GAGGGATGGCCAGAAATGGTGAACGAAGTTGATGACGAGACCTTTGATGTGTGAACCGTC 8906816 Query 176662 GTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAG---CTCGGAAACATCTTG 176718 | ||| ||| | ||| | ||| | | || || || || || | || |||| | Sbjct 8906817 CTGATCTTGATCAGCCATCACCATCACCTTTCCGTAACGGAGAGTCTTGAAATCATCATC 8906876 Query 176719 A---TAATCCTTAC-CTTGT--TGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTG 176772 | || ||| ||||| ||||| || | |||||| | | | |||| || Sbjct 8906877 CGTCTCATACTTTTTCTTGTACTGAAGTCCAAGAATCTTGATCATTGCGTTGATTTCAGC 8906936 Query 176773 GTTTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGG 176832 || | || |||| || | ||||||| || || | ||| || || || || Sbjct 8906937 ATTATCCGCGATTTGCTTCATATTACCGTCGCGAACGTTGAGAAGCTTTCCACGAAGTGG 8906996 Query 176833 GAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGC 176892 ||| || ||||| | ||||||||| || | || || || | ||| || | ||||| || Sbjct 8906997 GAAGACTCCGTACTTATCACGACCGACGATCGAAAGTCCGGAAACCGCCAAAGTCTTAGC 8907056 Query 176893 GGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTT 176952 ||||| ||||| || | |||||||||||||| | || | | || || || | ||| Sbjct 8907057 AGAATCTCCCTCAGTAAGGATGAGCGTACACTGTTGCGAATTTTTTGTTCCAGCGTCGTT 8907116 Query 176953 CGCATCGTCCAACTTGGGAATACC 176976 || || || | ||| |||||||| Sbjct 8907117 GGCGTCCTCGAGCTTTGGAATACC 8907140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504385535720