Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5 190 3e-43 >seq5 Length=14578851 Score = 190 bits (210), Expect = 3e-43 Identities = 340/491 (69%), Gaps = 4/491 (1%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||| ||||| || || |||| |||||| || || ||| || | | || |||||||| || Sbjct 9912589 CTTATCCACGGTAAATTGAACGGCGTTGACAGCTGGCTTGGTACGCAAGTAGTACATTCC 9912530 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACA-GTTTGCTCACGTTGG 203957 ||||| || ||||||| ||| ||||| | |||||| || | | | || | |||| Sbjct 9912529 AGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCGGCGTAGCTTGG 9912470 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | ||||||||||||||| || |||||| ||| |||||||| | | ||||| || | Sbjct 9912469 CTT-GGCCATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCACGATCGGCAG 9912411 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| | |||||| |||||| || |||||||| || || | | | || || | | Sbjct 9912410 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGCTCCTTGATAT 9912351 Query 204078 GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 | || | || | | || ||| ||||| || |||| ||| || || | || || Sbjct 9912350 CGTCTGG-AATTCCTGGGATGTTCTGAATCGATCCATTGTTGGCAATGAGGCGGTTCTTC 9912292 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 |||| || ||||| || | || || ||| || || ||| ||||||| ||| Sbjct 9912291 ATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGACGATT 9912232 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || ||||| ||||| ||||| | || | | | | ||| |||| |||| || | || Sbjct 9912231 TGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAATCGAT 9912172 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 |||||||| |||| |||||||||||| || || ||||| ||||||| ||| || | Sbjct 9912171 TCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAGCCATGAGGAGACTG 9912112 Query 204317 TTGCGCACACC 204327 ||||| || || Sbjct 9912111 TTGCGAACTCC 9912101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151552225520