Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5 147 5e-30 >seq5 Length=14578851 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| ||||| || ||||||||||||| |||||| || | || || || |||||| Sbjct 4175462 AGGACAAGATGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGACAGGGTTCTACCATCT 4175403 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||||||||||| | ||| ||||| || |||||||| ||| Sbjct 4175402 TCCAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTATCC 4175343 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||||| |||||| | | ||| || || | ||||| ||| Sbjct 4175342 TGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACTTCGAGAGTGATGGTC 4175283 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || || || Sbjct 4175282 TTTCCAGTCAGAGTCTTGACGAAGATCTG 4175254 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || || |||||||||||||||| ||||||||| | |||||| Sbjct 4175974 CGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTG 4175915 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || ||||||||||| || ||||| | ||||||||||| || |||||| Sbjct 4175914 CGTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCT 4175855 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | ||| || ||||| Sbjct 4175854 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAAGCTTCGACTTCCAAA 4175795 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || || || ||||| Sbjct 4175794 GTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATTTG 4175757 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| ||||||||||||| |||||| || | | ||| | |||||| Sbjct 4175006 AGAACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCC 4174947 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||||||||||||||| | ||||||||| || |||||| || || Sbjct 4174946 TCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT 4174887 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || || |||| |||||| | | ||| || || | ||||||||| Sbjct 4174886 TGAATCTTGGCTTTGACATTCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTC 4174827 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 4174826 TTTCCGGTCAATGTCTTGACGAAGATCTG 4174798 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||| |||||||| |||| ||||||||| | | ||| |||||||| Sbjct 4173720 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCC 4173661 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||| | ||||||||| || ||||| || || Sbjct 4173660 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 4173601 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || |||| ||| || | | || || ||||| ||||| || Sbjct 4173600 TGGAT-TTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAAGGTGATAGT 4173542 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| || || ||||| Sbjct 4173541 TTTTCCTGTCAACGTTTTGACGAAGATTTG 4173512 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||| ||||| |||| ||||||||| | | ||| |||||||| Sbjct 4173948 AGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCC 4173889 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||| | ||||||||| || ||||| || || Sbjct 4173888 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 4173829 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || |||| ||| || | | || || ||||| ||||| || Sbjct 4173828 TGGAT-TTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCGACTTCCAAAGTGATGGT 4173770 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || ||||| Sbjct 4173769 TTTTCCAGTGAGTGTCTTGACGAAGATTTG 4173740 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| |||||||| |||| ||||||||| | | ||| Sbjct 1551603 CGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTA 1551662 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || ||||||||||||||||| | | |||||||| || ||||||| Sbjct 1551663 CGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCT 1551722 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || |||| ||| || | | || || || | Sbjct 1551723 TCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGG 1551782 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||||||||||| ||||| || || || ||||| Sbjct 1551783 GGAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTG 1551820 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||| |||||||| |||| ||||||||| | | || | |||||| Sbjct 4175234 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCC 4175175 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| |||||||| | || ||||| || || |||||||| || Sbjct 4175174 TCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCT 4175115 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||||| | | ||| || || | ||||| ||| Sbjct 4175114 TGGATCTTAGCCTTGACATTCTCAATAGTGTCCGAAGCTTCGACCTCGAGGGTGATAGTC 4175055 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || Sbjct 4175054 TTTCCGGTAAGCGTCTTGACGAAGATCTG 4175026 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||||||||||||||| ||||||||||| || || || | ||||||||| |||| Sbjct 4175376 ACTCATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACCCTGTCGGATTACAACATCCA 4175435 Query 200994 GAAAGAGTCTACTCTTCACCTTGT 201017 || ||||| || || || ||||| Sbjct 4175436 AAAGGAGTCAACACTCCATCTTGT 4175459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178916056489589