Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 134 2e-26 >seq5 Length=14578851 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| | |||||| |||| ||||||||||| || || || Sbjct 4175945 CTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCAAA 4175886 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 4175885 GATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 4175826 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || |||| |||||||| || || |||| || || || Sbjct 4175825 CTCGATTGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTCAAAGTCTTGAC 4175766 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 4175765 GAAGATTTGCAT 4175754 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||||| || | || |||||| ||||| |||||||| || Sbjct 4173735 CCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 4173676 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || |||||||| |||||||| || | | ||||||||| | || Sbjct 4173675 AGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 4173616 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| ||| || |||| || | | || ||| | ||||| Sbjct 4173615 ATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACC 4173556 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| || |||| |||||| || ||||||||||| Sbjct 4173555 TCCAAGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4173509 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || ||||| ||||| |||||||| Sbjct 1551632 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAA 1551691 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||||| | || | | |||||||| |||||| ||||| | Sbjct 1551692 GATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATT 1551751 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || || | | || || || |||||||| || || || Sbjct 1551752 CTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTTACCCGTCAGAGTCTTGAC 1551811 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 1551812 GAAGATTTGCAT 1551823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || ||||| | | || || |||||||| |||||||| Sbjct 4173927 TCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAG 4173868 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||||||||| | || | | ||||||||| ||| || |||| || Sbjct 4173867 ATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTC 4173808 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| | || || |||| ||||||||||| || || || || || || Sbjct 4173807 TCGATGGTATCGGAAGCCTCGACTTCCAAAGTGATGGTTTTTCCAGTGAGTGTCTTGACG 4173748 Query 46583 AAGATTTGCATT 46594 |||||||||||| Sbjct 4173747 AAGATTTGCATT 4173736 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||||||||| ||||| ||||| ||||| || | || ||| Sbjct 4175003 ACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCG 4174944 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| |||||||| || | | ||||||||| | || | | ||||||||| Sbjct 4174943 AGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGA 4174884 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||| || | | ||||| | ||| || || | ||||| || || Sbjct 4174883 ATCTTGGCTTTGACATTCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTT 4174824 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| || || || ||||| |||||| Sbjct 4174823 CCGGTCAATGTCTTGACGAAGATCTGCATT 4174794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235806968840