Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5 152 5e-32 >seq5 Length=14578851 Score = 152 bits (168), Expect = 5e-32 Identities = 231/327 (71%), Gaps = 4/327 (1%) Strand=Plus/Plus Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGT--CAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981 ||| || || || |||||| ||| || ||| || ||||| || ||||| || |||||| Sbjct 11385993 CCTCGAGATCAGCTCGTTG--GAATGTGTCAAACCTGGCATCAGACCGCGCTTCTTGAGC 11386050 Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 || || || | ||||| || |||||||| |||||||||||| ||||| || | | Sbjct 11386051 CAGAAAATCGATGCGAACGATCCGCTAAAGAAGATGCCCTCGACGGCGGCGAATGCGATC 11386110 Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTT 133101 || || ||| |||||| ||| | || || ||||| || |||||||| |||||||| Sbjct 11386111 AGCCGTTCGGCGAACGAGGCCTTGGTGTCGGAAATCCAACGAAGCGCCCAGTCGGCCTTC 11386170 Query 133102 TCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAA 133161 | |||| | || | | ||||||||| |||| | ||| | | Sbjct 11386171 TTCTTGATGAACTCGAACTCGAAGATGGCGTTGAACAGCTTCATGCGCTCCTTCTCATCG 11386230 Query 133162 CGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATT 133221 || | |||||| |||||||| | || ||||| |||||||| | ||||| ||||||||| Sbjct 11386231 CGGATGTAGGTCTCGATGAGCTTTGAGTACATCTCCGAGTGAATATTCTCGATGGCGATT 11386290 Query 133222 TGAAAGCCGTAAAAGCACCGCGCCTCG 133248 || || ||||| ||| | ||||||||| Sbjct 11386291 TGGAATCCGTAGAAGAAGCGCGCCTCG 11386317 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| || ||||||||||| | || |||||||| | Sbjct 4173736 AATGCAAATCTTCGTCAAGACACTCACTGGAAAAACCATCACTTTGGAAGTCGAGGCTTC 4173795 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | | | | |||| ||||||| ||||| |||||||| || | ||||| Sbjct 4173796 CGATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCA 4173855 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | ||| || || ||||| || || | | || || |||||||| Sbjct 4173856 GCAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAA 4173915 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| |||| || || ||||| || || | ||||| || Sbjct 4173916 CATCCAGAAGGAATCGACTCTTCACTTGGTACTCCGCCTCAGAGGAGG 4173963 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| |||||| | || || ||||| |||||| | || || ||||| || Sbjct 4173509 ATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCTTGGAGGTGGAGGCTTCC 4173568 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | |||| ||||||| ||||| |||||||| || | ||||| Sbjct 4173569 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 4173628 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | ||||| | ||| || || ||||| || || | | || || ||||||||| Sbjct 4173629 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAAC 4173688 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || |||||||| ||| | ||||| || Sbjct 4173689 ATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTCAGAGGAGG 4173735 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || || |||||| |||| ||||| || | Sbjct 4175023 ATGCAGATCTTCGTCAAGACGCTTACCGGAAAGACTATCACCCTCGAGGTCGAAGCTTCG 4175082 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| || ||||| || | || || Sbjct 4175083 GACACTATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 4175142 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || || ||||| || || | || |||||| ||||||||| Sbjct 4175143 CAACGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAAC 4175202 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || |||||||| ||| | ||||| || Sbjct 4175203 ATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTCAGAGGAGG 4175249 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| || || || || |||| ||||||||| || Sbjct 1551823 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTCCCCTCGAAGTCGAGGCCTCC 1551764 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| || |||||||| | ||||| Sbjct 1551763 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 1551704 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || || || || || || | || || ||| |||||||||| Sbjct 1551703 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 1551644 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || || ||||| || ||| Sbjct 1551643 ATCCAGAAGGAGTCCACTCTCCACTTGGTTCTCCGT 1551608 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || || |||||||| |||| ||||| || | Sbjct 4175250 AATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAAGTCGAAGCTTC 4175309 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| |||| | || |||| || || || ||||| || | |||| Sbjct 4175310 TGACACCATCGAAAACG-TTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACC 4175368 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||| | ||||| | ||| || || || |||| || | | ||||| || |||| Sbjct 4175369 AACAGAGACTCATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACCCTGTCGGATTACA 4175428 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || ||| | || || ||| Sbjct 4175429 ACATCCAAAAGGAGTCAACACTCCATCTTGTCCTTCGT 4175466 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || || |||||| |||| ||||| || | Sbjct 4174794 AATGCAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTC 4174853 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | |||| || || | ||||| ||||||||||| | ||||| Sbjct 4174854 GGACACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCA 4174913 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | ||| || || || || || || | || || || ||| ||||| Sbjct 4174914 GCAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAA 4174973 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| | || || ||| | || || || Sbjct 4174974 CATCCAAAAGGAGTCTACTCTCCATCTCGTTCTTCG 4175009 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || |||||||| | || ||||| || | Sbjct 4175754 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4175813 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| || ||||| || | ||||| Sbjct 4175814 GACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAG 4175873 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || ||||| || |||| ||||| | |||||||||| Sbjct 4175874 CAGCGCTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGACGCACTTTGTCCGACTACAAC 4175933 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| |||| || ||| | || || ||| Sbjct 4175934 ATCCAAAAGGAGTCGACCCTTCATCTCGTTCTCCGT 4175969 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||| || || || || || || ||| ||||||||| ||||| |||||| | |||| Sbjct 11386394 ACCAAGTTCTCATTAACAATACCATCGGAGGCGGCGAAGAAGGCGAGCACGCGGGAGATG 11386453 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | |||| | | | |||| |||||| ||| | | || ||| || |||||| Sbjct 11386454 AAGTACTGCTCATCGCCATTCATCTTCTCCCAATCGTTCATATCTTTGCCCAAATCCACC 11386513 Query 133399 TCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 |||||||| ||||||||||| || |||| || ||||| Sbjct 11386514 TCCTCGACAGTCCAAAACGAGGCGACGGCCTTCTTGTA 11386551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170505457280