Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 >seq5 Length=14578851 Score = 118 bits (130), Expect = 1e-21 Identities = 222/326 (68%), Gaps = 3/326 (1%) Strand=Plus/Minus Query 110104 TCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCA 110163 || || || || ||||| |||||||| || || ||||| |||||| ||| ||||| Sbjct 9911809 TCAGCGAGTCCTTGAACTCCGAGACCGATTGGACGATGGCGCATGTTCGAGTTGCGAGCC 9911750 Query 110164 GTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTC 110223 ||| | || ||| ||||| ||| |||| | || |||||||| || | ||| Sbjct 9911749 TCTTCAATTGGATAATAGTTGACGTCAATGATCTTGTTCAGATTCTTTGTTATGACCTTG 9911690 Query 110224 GTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGG 110283 || | ||| ||| ||| | | |||||| |||| || ||| | || | | Sbjct 9911689 GTCACCTCAGCGAGCTTGACAAAGTCGAACTTTTTG---TCGTTAGTCACGAAACGGTTC 9911633 Query 110284 AGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATT 110343 | ||||||||| || |||||||| |||| | ||||||| | | ||| || | ||| Sbjct 9911632 AAAGCAATAGAAGCGAGATTGCAAACAGCAACCTCGTCTGGAGCAGAGTACTCGATAATC 9911573 Query 110344 TCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTG 110403 || || ||||||||||| | ||| || |||||||| | ||| ||||| ||| ||| Sbjct 9911572 TCAGTGCACAAGTTGGAGCACTTGATAGTTCCCAAGTTTTGCTGGTTCGACTTGCGATTG 9911513 Query 110404 CATGCATCCTTATAGAGCATGTATGG 110429 |||||||| ||| |||||||| Sbjct 9911512 GCGGCATCCTTGTAGGTGATGTATGG 9911487 Score = 105 bits (116), Expect = 8e-18 Identities = 362/560 (65%), Gaps = 11/560 (2%) Strand=Plus/Minus Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 ||||||| | | | | || || | ||||||||| || || || | ||| | ||| || Sbjct 9911101 GACCAATCTTGATCTTTTTCGACGCGCTTCATGAAGAGATCTGGCACCCAGAGAGCCAAG 9911042 Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 || | |||||| ||| ||||||| || ||| || || | | ||| || Sbjct 9911041 AACAAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCG 9910982 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG---ACCC 110766 | |||||| | ||||||||| || | |||| |||| | ||| || ||| Sbjct 9910981 AAGATATCGGCGTGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGTTTGTTACCT 9910922 Query 110767 GCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCG 110826 | || | ||| || || || ||| ||| |||| | ||||| || || | ||||| | Sbjct 9910921 CCTTGATCAACGTAACGAGCGGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTG 9910862 Query 110827 GATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATA 110886 ||| ||||| || || ||| || | | ||||| || | ||| | || | | Sbjct 9910861 GATGTTCCATTGGTTCCGGCAATCACTGAGCCAGTTGCACGGATCTTGTGCACATTGAGA 9910802 Query 110887 CCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCA 110946 || || || || || | ||| ||| | || |||| | | || | || || || Sbjct 9910801 CCGATGCCTCCAGCACTCTTCGAAATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCG 9910742 Query 110947 TCAATCGAATCTGC-CTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 |||||| || | || | | ||| |||| ||| ||||||||||| ||||| ||| Sbjct 9910741 AGAATCGAGTCCTCGCTCATCGTCAACAAGAA-GCATGAAGACATCTGTGGACGGCACGT 9910683 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATG---AATGAACAGACCTTGGGACATCTTGTT 111062 ||| | |||||||| || || | ||||| ||| || | || ||||||| ||| Sbjct 9910682 TCCAGAGTTGAAGAGAGTTGGAGAGGCATGTGTCATGTAC---CGTTCGGACATCAAGTT 9910626 Query 111063 GTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAA 111122 ||| || || | |||| || | ||||| ||||| || |||||||| || ||||| | Sbjct 9910625 GTACGTCTCAATGGCGGCGGAAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAG 9910566 Query 111123 CATATATTGAGGCGTTTCGA 111142 ||| | || || |||||| Sbjct 9910565 CATTTGCTGTGGTCTTTCGA 9910546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973298072600