Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 6e-13 seq1 87.8 2e-12 >seq5 Length=14578851 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 116994 AACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAA 117053 ||| |||||||| |||||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 11383982 AACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCATGAAGTCAAA 11384041 Query 117054 TGGATTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACA 117112 ||||||||| |||| | | | ||| || | | | | ||| ||| |||| | | Sbjct 11384042 TGGATTCTTGACGTTGTACAGCTTATCGCATCCGAGC-TCCTGGAGCAGATGATCGGCGA 11384100 Query 117113 CATACTCAATGTACTCGGACATCTTCTCAG-AGTTCATACCGATGAGATTACATGGGAGT 117171 | |||| ||||||| ||||||| || | ||||||| ||||| | | | ||||| Sbjct 11384101 CGAACTCGATGTACTGGGACATC-AGTCGGCAGTTCATTCCGATCATGTCAACGGGGAGG 11384159 Query 117172 GCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 117218 || || || |||| | | |||||| | || || ||| | | ||| Sbjct 11384160 GCTTCGGTGAGGAACTCCTGCTCAATGGCGACAGCGTCTCTGATGAT 11384206 >seq1 Length=15455979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 155044 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 155103 ||||| | ||||| ||||||||||||||||| | ||||| ||| | ||||| || Sbjct 5682515 TATGGAAGAGTTGCTCCACGATCCGGTCTCGCAGCCAAGCACTTCATTGATGTTGGGGCT 5682456 Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 155163 |||||| ||||| || || || || |||| ||| |||| ||||| | | | Sbjct 5682455 GGTGTTGTTGATAGTGATTACCGTGGAGAGATCAAGGTCCTTCTTTTCAACTTCAGCAAA 5682396 Query 155164 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 155214 | ||||||||||| ||||| || ||| | || ||||| || ||| |||| Sbjct 5682395 ACTGACTTTGAGGTGAAGAAGGGTGATAGAATTGCACAGCTCGTCTGTGAG 5682345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978093463080