Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 4e-15 >seq4 Length=16627154 Score = 96.9 bits (106), Expect = 4e-15 Identities = 253/384 (66%), Gaps = 4/384 (1%) Strand=Plus/Minus Query 154723 TGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAG 154782 |||| ||| || || |||||||| ||||| || |||| ||||| ||||||| Sbjct 9661133 TGATTCCAACATCTGCTCATGGAACCAATCCAGCGTCTGCTCAAATGGCTAATATGAAAG 9661074 Query 154783 TTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAG 154842 | || | ||| | | |||| | |||| ||||| || |||||| | | || | Sbjct 9661073 TGGTTGTTGTGGATTCTGATCACCATGGAAACATCAACTATAAAGATTTGGCAGCTAAGG 9661014 Query 154843 CAATCATGAATACATT--TGAACTGTCATGTATTATGATTACATACCCATCTACACATGG 154900 | | | | ||| | | ||||| | || ||| | || || || ||||| || || Sbjct 9661013 C--TGAGAAGTACTCTAATCAACTGGCTGCAATCATGGTCACCTATCCTTCTACCCACGG 9660956 Query 154901 TGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGT 154960 || || ||| | ||| | | | ||| | | |||||||| | || ||||| || Sbjct 9660955 AGTCTTCGAATCATCAATTCGCGATGTTTGTGACAAGGTTCATGAGCACGGAGGTCAAGT 9660896 Query 154961 ATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGG 155020 ||| | |||||||| ||| | ||||| || || ||| | ||| | || || || Sbjct 9660895 TTATTTGGATGGAGCCAATATGAATGCTCAAGTCGGATTGTGTCGCCCAGGAGATTACGG 9660836 Query 155021 TGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGG 155080 | ||||| | ||| | ||||| || || ||||||||||||||||| ||||| || || Sbjct 9660835 TAGTGATGTGTCACATTTGAACTTGCACAAGACATTCTGTATTCCACACGGAGGAGGTGG 9660776 Query 155081 TCCTGGCGTAGGTCCTATAGGTGT 155104 ||| || || || || || || || Sbjct 9660775 TCCAGGAGTTGGACCAATTGGAGT 9660752 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 153906 GCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACA 153965 || || || ||| | || || |||||| | | |||||||| || ||||||||||| || Sbjct 9664481 GCTCTCCAAACTCGTGAACAACATATCCGTCGTGACAAAGCCACTAGTAACATCTGTACC 9664422 Query 153966 GCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGG 154015 || || || || ||||| |||||||||| | | ||||||| || ||||| Sbjct 9664421 GCCCAAGCTCTTCTGGCCAATATGTCTGCAATGTATGCAGTGTACCATGG 9664372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579210142861280