Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 >seq4 Length=16627154 Score = 107 bits (118), Expect = 2e-18 Identities = 258/388 (66%), Gaps = 12/388 (3%) Strand=Plus/Minus Query 159398 TGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAG 159457 |||| ||| || || |||||||| ||||| || || || ||||| ||||||| Sbjct 9661133 TGATTCCAACATCTGCTCATGGAACCAATCCAGCGTCTGCTCAAATGGCTAATATGAAAG 9661074 Query 159458 TTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAG 159517 | || | ||| | | |||| | |||| ||||| || |||||| | | || | Sbjct 9661073 TGGTTGTTGTGGATTCTGATCACCATGGAAACATCAACTATAAAGATTTGGCAGCTAAGG 9661014 Query 159518 CAATCATGAATACATT--TGAACTGTCATGTATTATGATTACATATCCATCTACACATGG 159575 | | | | ||| | | ||||| | || ||| | || ||||| ||||| || || Sbjct 9661013 C--TGAGAAGTACTCTAATCAACTGGCTGCAATCATGGTCACCTATCCTTCTACCCACGG 9660956 Query 159576 TGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGT 159635 || || ||| || || | | | ||| | | ||||||||| | || ||||| || Sbjct 9660955 AGTCTTCGAATCATCAATTCGCGATGTTTGTGACAAGGTTCATGAGCACGGAGGTCAAGT 9660896 Query 159636 ATATCTTGATGGTGCAAATCTAAATGCACAGGTAGG----TCTAGCAAAACCATGTGACT 159691 ||| | ||||| || ||| | ||||| || || || | | || ||| | || | Sbjct 9660895 TTATTTGGATGGAGCCAATATGAATGCTCAAGTCGGATTGTGTCGC----CCAGGAGATT 9660840 Query 159692 ATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTG 159751 | ||| ||||| | ||| | ||||| || |||||||||||||||||||| ||||| | Sbjct 9660839 ACGGTAGTGATGTGTCACATTTGAACTTGCACAAGACATTCTGTATTCCACACGGAGGAG 9660780 Query 159752 GAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 | ||||| || || || || ||||| || Sbjct 9660779 GTGGTCCAGGAGTTGGACCAATTGGAGT 9660752 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 158581 GCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACA 158640 || || || ||| | || || |||||| | | |||||||| || ||||||||||| || Sbjct 9664481 GCTCTCCAAACTCGTGAACAACATATCCGTCGTGACAAAGCCACTAGTAACATCTGTACC 9664422 Query 158641 GCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGG 158690 || ||||| || ||||| |||||||||| | ||||||| || ||||| Sbjct 9664421 GCCCAAGCTCTTCTGGCCAATATGTCTGCAATGTATGCAGTGTACCATGG 9664372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588048502315120