Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5 187 6e-42 seq11 91.5 3e-13 >seq5 Length=14578851 Score = 187 bits (206), Expect = 6e-42 Identities = 168/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || ||||| ||||| ||||| || |||||||||| |||||| | ||||| || Sbjct 4175004 AACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTC 4174945 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || |||||||| |||| || |||||||| ||||| || || |||||||| Sbjct 4174944 GAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTG 4174885 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||| ||||| |||||||||||| ||| ||||| ||||| | |||||| Sbjct 4174884 AATCTTGGCTTTGACATTCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTT 4174825 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| ||||| || || ||||| | |||||| Sbjct 4174824 TCCGGTCAATGTCTTGACGAAGATCTGCATT 4174794 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || | ||| ||||||||||| || || || ||||| || | |||||| Sbjct 4173730 TCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGT 4173671 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || |||||||| || |||||||| |||| || |||||||| || || || Sbjct 4173670 TCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCC 4173611 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || |||||||| ||||| ||||| ||||| ||||| || ||| ||||| || | Sbjct 4173610 CTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAA 4173551 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | || ||||||||||| ||||| ||||| | |||||| Sbjct 4173550 GGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4173509 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||||||||| || || || ||||| |||| ||||| | ||||| || Sbjct 1551614 AACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 1551673 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || |||||||| | || ||| |||||||| ||||| ||||| |||||||| Sbjct 1551674 GAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTG 1551733 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| ||||| ||||| || || || ||||| |||| || ||||| Sbjct 1551734 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTT 1551793 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || ||||| | |||||| Sbjct 1551794 ACCCGTCAGAGTCTTGACGAAGATTTGCAT 1551823 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || ||||| ||||| || |||||||| | || ||||| |||||||| Sbjct 4175459 ACAAGATGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGACAGGGTTCTACCATCTTCC 4175400 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || |||||||| |||| ||||||||||| || || ||||| || || || Sbjct 4175399 AATTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGG 4175340 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || |||||||| ||| ||| ||||| || || | |||||| Sbjct 4175339 ATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACTTCGAGAGTGATGGTCTTT 4175280 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| ||| || ||||| | |||||| Sbjct 4175279 CCAGTCAGAGTCTTGACGAAGATCTGCATT 4175250 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || | ||| ||||||||||| || || || ||||| || | || || Sbjct 4175244 TCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGT 4175185 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || |||||||| | |||||| || ||||| || || || Sbjct 4175184 ACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGTGGGATTCC 4175125 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || |||||| |||||||| ||||||||| ||| || || || Sbjct 4175124 TTCCTTGTCTTGGATCTTAGCCTTGACATTCTCAATAGTGTCCGAAGCTTCGACCTCGAG 4175065 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| || | || || ||||| | ||||| Sbjct 4175064 GGTGATAGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4175023 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| || ||||| ||||| || ||||| |||| | ||| | || || || Sbjct 4175963 AACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTC 4175904 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || || ||||| | || || |||||||| || || ||||| ||||| || Sbjct 4175903 GAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTG 4175844 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| ||||| || ||||||||| ||| ||||| | || | ||||| Sbjct 4175843 GATCTTGGCCTTGACATTCTCGATTGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTT 4175784 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| || ||||| | |||||| Sbjct 4175783 TCCGGTCAAAGTCTTGACGAAGATTTGCAT 4175754 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | || ||| || ||||| ||||| ||||| |||||||| ||||| Sbjct 4174108 CTTACCGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTT 4174049 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| |||||||||||||| || ||| ||||| || || | || ||||| || Sbjct 4174048 AGCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGT 4173989 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | |||||| Sbjct 4173988 GAGTGTCTTGACGAAGATCTGCATT 4173964 >seq11 Length=19495157 Score = 91.5 bits (100), Expect = 3e-13 Identities = 177/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 125527 CCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAAAGAA 125586 |||||||||||||| || |||||||| |||||| | || |||| | ||||| || ||| Sbjct 12158671 CCAAAGAAACACGGTAGAGGAGGACAGTCTGCTGTTCGGTTTGCTCGTCTTCGTAACGAA 12158730 Query 125587 AAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCAACT-CAATGTTTTTTGCAA-- 125643 ||| | |||||||| | | |||||||| || || || | |||||| | || Sbjct 12158731 AAGCGTCACAACTACGTTCGCAAAGTCGCTGAAAACGCTGTTGAAATGTTCATCAAAAAT 12158790 Query 125644 GACAACAAGTGCAACGTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAACAAAG 125703 |||| |||| || ||| ||| | || |||||||| || || ||||| || | Sbjct 12158791 GACA--AAGT-CACCGTTTCTGGATTAATCCTTGCTGGAAGTGCTGATTTCAAGACGGAA 12158847 Query 125704 CTTCTGGAATCTGACCTTTTCGACCAAAGACTTCGAACAAAAGTCTTGGGGCTTTTCGAC 125763 || |||| || | ||||| |||||||||| | ||||| | | | | ||||| Sbjct 12158848 CTCGGTCAATCCGATATGTTCGATCAAAGACTTCAAGCAAAAATGATCAAGACTGTCGAC 12158907 Query 125764 ATTCCGTATGGCGGCGA 125780 ||| | ||||| || || Sbjct 12158908 ATTGCTTATGGTGGAGA 12158924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476383009489