Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 >seq5 Length=14578851 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| ||||| ||||| ||||||||||| ||| | |||| || Sbjct 4173945 ACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCA 4173886 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || |||| ||||||||| | || | ||||||||||| Sbjct 4173885 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 4173826 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | || ||||| || || | || ||||||| Sbjct 4173825 ATTTTGGCTTTGAC--ATTCTCGATGGTATCGGAAGCCTCGACTTCCAAAGTGATGGTTT 4173768 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||||| ||||| || ||||| ||||| Sbjct 4173767 TTCCAGTGAGTGTCTTGACGAAGATTTGCAT 4173737 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| |||||||| ||| | ||| |||| || Sbjct 4175231 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCCTCA 4175172 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || | ||||||||| ||| | || | || |||||||| Sbjct 4175171 AGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGG 4175112 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCG--GCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || | | ||| || || || |||| ||| || || | Sbjct 4175111 ATCTTAGCCTTGAC--ATTCTCAATAGTGTCCGAAGCTTCGACCTCGAGGGTGATAGTCT 4175054 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || || ||||| || |||||||||||| Sbjct 4175053 TTCCGGTAAGCGTCTTGACGAAGATCTGCATA 4175022 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||||||||| ||| | |||| || Sbjct 4173717 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCA 4173658 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || |||| ||||||||| | || | ||||||||||| Sbjct 4173657 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 4173598 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | || ||||| || || | ||| || |||| Sbjct 4173597 ATTTTGGCTTTGAC--ATTCTCGATGGTATCGGAAGCCTCCACCTCCAAGGTGATAGTTT 4173540 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || | || || || ||||| ||||| Sbjct 4173539 TTCCTGTCAACGTTTTGACGAAGATTTGCAT 4173509 Score = 98.7 bits (108), Expect = 6e-16 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| || || ||||| | ||| |||| || || || |||||||| || Sbjct 4174985 TCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAG 4174926 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | ||||||||||| |||||| |||||| || Sbjct 4174925 ATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTGGCTTTGAC--AT 4174868 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| || || || |||| ||| || || ||||| || | ||||| Sbjct 4174867 --TCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAATGTCTT 4174810 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 4174809 GACGAAGATCTGCAT 4174795 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| || ||||| ||| ||| |||| |||| || |||||||| || Sbjct 4175441 TCCTTTTGGATGTTGTAATCCGACAGGGTTCTACCATCTTCCAATTGCTTTCCGGCGAAG 4175382 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| || |||||| | || | || ||||| || ||||| || ||| | Sbjct 4175381 ATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTT 4175322 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || || || |||| || ||||| ||||| || |||||||| || Sbjct 4175321 TCGATGGTGTCAGAAGCTTCGACTTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACG 4175262 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 4175261 AAGATCTGCAT 4175251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632147974776