Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 131 2e-25 >seq5 Length=14578851 Score = 131 bits (144), Expect = 2e-25 Identities = 420/646 (65%), Gaps = 22/646 (3%) Strand=Plus/Minus Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 || |||||||| |||||||| | ||| |||| || | |||| || | |||||| | | Sbjct 9911113 GGGCACATCAACGACCAATCTTGATCTTTTTCGACGCGCTTCATGAAGAGATCTGGCACC 9911054 Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290 || ||||| | || || || | || | | ||||| || | ||| || ||| Sbjct 9911053 CAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGA 9910994 Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350 ||| ||| || | ||||| || |||||||| || || || || || | | | |||||| Sbjct 9910993 GCAACAAACTCGAAGATATCGGCGTGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGT 9910934 Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410 ||||| |||||||||||||| | || | || || ||||| || || | | |||||| Sbjct 9910933 CGTTTGTTACCTCCTTGATCAACGTAACGAGCGGTGTTGTTGTAGACACGAAGCATTGGT 9910874 Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT--TCCACTAGCTCTTATAT 48468 | | ||||| ||| | ||||||||||| | | || ||| ||| | || | || | Sbjct 9910873 ATGAGTCCATTGGATGTTCCATTGGTTCCGGCA--ATCACTGAGCCAGTTGCACGGATCT 9910816 Query 48469 --TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAG 48526 | | |||| | ||| || || || || | || || || ||||| ||| | || | Sbjct 9910815 TGTGCACATTG--AGACCGATGCCTCCAGCACTCTTCGAAATCAGAGCGCACTGCTTCAA 9910758 Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586 || || || ||||| || || || |||| | || | || || |||||| Sbjct 9910757 AGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAGCATGAAGACAT 9910698 Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATG---AATAAACCATTT 48643 || ||| | || ||||| || || || | |||||||| ||||| || ||| | Sbjct 9910697 CTGTGGACGGCACGTTCCAGAGTTGAAGAGAGTTGGAGAGGCATGTGTCATGTACCGT-- 9910640 Query 48644 CTCTGATAACAATTTATATGTTTCAATAACAG----AATCTATATCCCATTGATGTATAC 48699 || || | ||| || || || ||||| | | ||| | | | || || || | Sbjct 9910639 -TCGGACATCAAGTTGTACGTCTCAATGGCGGCGGAAATGTCTTTTCC----GTGGATTC 9910585 Query 48700 CTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCA 48759 | || | |||||||| | ||| | || |||||||| || | || || || || || | Sbjct 9910584 CAATGGCGACACGCATCAGCATTTGCTGTGGTCTTTCGACGACTTCCTTGTTGATCTTGA 9910525 Query 48760 AAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGA 48805 ||| || || || | || || || || || ||| |||| || Sbjct 9910524 GAAGGTAGGAACGCTCGAGCGTCTTGAATCCGAAGTAGGTGTAAGA 9910479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106221325880