Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5 250 2e-60 seq9 132 4e-25 seq11 107 2e-17 seq1 87.8 1e-11 >seq5 Length=14578851 Score = 250 bits (276), Expect = 2e-60 Identities = 556/823 (68%), Gaps = 20/823 (2%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGA 551848 ||||||| |||||||||| || || ||||| ||| | ||| || | ||| | ||| Sbjct 5574495 TGGAGATACTCATCTTGGAGGAGAGGATTTCGATCAAAGAATGCT-TCAACACTTTATGA 5574437 Query 551849 A-GATTTTAAACGAAAAAACA--AAGTTGATCTATCTACATC----TGCCAAAGCTCTTC 551901 | || || |||||||| | | ||| |||| | ||| ||||| | | Sbjct 5574436 ATGAATTCAAACGAAAGACCGGGAAGGATATCTCACCGAATCCACGTGCCA------TCC 5574383 Query 551902 GTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTC-ATCTGGTACTCAAACC 551960 | ||||| |||| || || ||| | ||||| || | ||||| | || | | || || Sbjct 5574382 GACGTCTCCGAACCGCCTGTGAACGTGCCAAGAGAACACTTTCTAGCTCAT-CGGAAGCC 5574324 Query 551961 ACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCC 552020 ||| ||||||| ||||| |||| || ||||| |||| | || | | || Sbjct 5574323 ACTGTTGAAGTGGATTCTCTATTCGAAGGAATCGATTTGTGCTCAAAGATCACTCGTGCT 5574264 Query 552021 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTT 552080 ||| || || | ||| ||||||| || ||||||| |||||||||| || | | | Sbjct 5574263 CGATTCGAGGAACTCTGTGCTGATCTTTTCCGAAAAACTCTTGAACCAGTTGAGAAGGCT 5574204 Query 552081 TTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCT 552140 | ||||| ||||| | || |||||||| | ||||| | || | ||||| |||||| Sbjct 5574203 CTTCGAGATGCAAAGCTCGACAAATCCAACATTGATGAAGTCGTTTTGGTTGGAGGATCT 5574144 Query 552141 ACAAGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAA 552199 || | |||| || |||| | ||| | || ||| |||||| || || || | || Sbjct 5574143 ACTCGTGTTCCAAAGATTCAGAAGATGCTCCAGGACTT-TTTCAACGGAAAGGAACTGAA 5574085 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | ||||||||||| |||||||| | || || ||| ||||||||||| | || Sbjct 5574084 TTGCTCAATCAATCCAGATGAAGCTGTTGCATTCGGAGCTGCAGTTCAAGCAGCTGTACT 5574025 Query 552260 TTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATC 552319 ||||||| | ||| ||| | | || || | | || || || ||| |||| || Sbjct 5574024 TTCTGGAGTCAAGGATCAAACAATCAAAGATGTATTGCTGGTTGACGTTGCTCCACTGAG 5573965 Query 552320 TCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTAT 552379 |||||| | || |||| ||| ||| | ||||| ||||| || ||| |||| || | || Sbjct 5573964 TCTTGGAATCGAGACAGCTGGTGGTGTGATGACCAATCTCATTGATCGAAACACCAGAAT 5573905 Query 552380 TCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAAT 552439 ||| || ||| ||| |||| || | ||||||||| | | || |||| Sbjct 5573904 TCCAACAAAGGCATCAAAAACATTCACTACATACGCCGATAATCAACCAGGAGTCTCAAT 5573845 Query 552440 TCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTT-A 552498 |||| | | ||||||||| || | ||| ||||| ||| ||||| || || | Sbjct 5573844 TCAAGTATACGAAGGAGAACGAGCCATGACTCGGGATAACCATCGTCTTGGAACATTCGA 5573785 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 ||| || || ||||| || ||||| || || || || || |||||||| ||||| |||| Sbjct 5573784 ATTGAGT-GGAATTCCACCAGCTCCACGAGGTGTTCCTCAGATTGAAGTCACTTTTGATA 5573726 Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||||||| ||||||||| |||||||| | ||| |||||||| Sbjct 5573725 TCGATGCAAATGGAATTCTGAATGTGTCAGCTGAGGATAAATC 5573683 Score = 250 bits (276), Expect = 2e-60 Identities = 556/823 (68%), Gaps = 20/823 (2%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGA 551848 ||||||| |||||||||| || || ||||| ||| | ||| || | ||| | ||| Sbjct 6048672 TGGAGATACTCATCTTGGAGGAGAGGATTTCGATCAAAGAATGCT-TCAACACTTTATGA 6048614 Query 551849 A-GATTTTAAACGAAAAAACA--AAGTTGATCTATCTACATC----TGCCAAAGCTCTTC 551901 | || || |||||||| | | ||| |||| | ||| ||||| | | Sbjct 6048613 ATGAATTCAAACGAAAGACCGGGAAGGATATCTCACCGAATCCACGTGCCA------TCC 6048560 Query 551902 GTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTC-ATCTGGTACTCAAACC 551960 | ||||| |||| || || ||| | ||||| || | ||||| | || | | || || Sbjct 6048559 GACGTCTCCGAACCGCCTGTGAACGTGCCAAGAGAACACTTTCTAGCTCAT-CGGAAGCC 6048501 Query 551961 ACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCC 552020 ||| ||||||| ||||| |||| || ||||| |||| | || | | || Sbjct 6048500 ACTGTTGAAGTGGATTCTCTATTCGAAGGAATCGATTTGTGCTCAAAGATCACTCGTGCT 6048441 Query 552021 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTT 552080 ||| || || | ||| ||||||| || ||||||| |||||||||| || | | | Sbjct 6048440 CGATTCGAGGAACTCTGTGCTGATCTTTTCCGAAAAACTCTTGAACCAGTTGAGAAGGCT 6048381 Query 552081 TTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCT 552140 | ||||| ||||| | || |||||||| | ||||| | || | ||||| |||||| Sbjct 6048380 CTTCGAGATGCAAAGCTCGACAAATCCAACATTGATGAAGTCGTTTTGGTTGGAGGATCT 6048321 Query 552141 ACAAGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAA 552199 || | |||| || |||| | ||| | || ||| |||||| || || || | || Sbjct 6048320 ACTCGTGTTCCAAAGATTCAGAAGATGCTCCAGGACTT-TTTCAACGGAAAGGAACTGAA 6048262 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | ||||||||||| |||||||| | || || ||| ||||||||||| | || Sbjct 6048261 TTGCTCAATCAATCCAGATGAAGCTGTTGCATTCGGAGCTGCAGTTCAAGCAGCTGTACT 6048202 Query 552260 TTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATC 552319 ||||||| | ||| ||| | | || || | | || || || ||| |||| || Sbjct 6048201 TTCTGGAGTCAAGGATCAAACAATCAAAGATGTATTGCTGGTTGACGTTGCTCCACTGAG 6048142 Query 552320 TCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTAT 552379 |||||| | || |||| ||| ||| | ||||| ||||| || ||| |||| || | || Sbjct 6048141 TCTTGGAATCGAGACAGCTGGTGGTGTGATGACCAATCTCATTGATCGAAACACCAGAAT 6048082 Query 552380 TCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAAT 552439 ||| || ||| ||| |||| || | ||||||||| | | || |||| Sbjct 6048081 TCCAACAAAGGCATCAAAAACATTCACTACATACGCCGATAATCAACCAGGAGTCTCAAT 6048022 Query 552440 TCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTT-A 552498 |||| | | ||||||||| || | ||| ||||| ||| ||||| || || | Sbjct 6048021 TCAAGTATACGAAGGAGAACGAGCCATGACTCGGGATAACCATCGTCTTGGAACATTCGA 6047962 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 ||| || || ||||| || ||||| || || || || || |||||||| ||||| |||| Sbjct 6047961 ATTGAGT-GGAATTCCACCAGCTCCACGAGGTGTTCCTCAGATTGAAGTCACTTTTGATA 6047903 Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||||||| ||||||||| |||||||| | ||| |||||||| Sbjct 6047902 TCGATGCAAATGGAATTCTGAATGTGTCAGCTGAGGATAAATC 6047860 Score = 223 bits (246), Expect = 3e-52 Identities = 550/824 (67%), Gaps = 23/824 (3%) Strand=Plus/Plus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGA 551848 ||||||| |||||||||| || || ||||| ||| | ||| || | | | | | | Sbjct 6050585 TGGAGATACTCATCTTGGAGGAGAGGATTTCGATCAAAGAATGCTCCAACACTTTATGAA 6050644 Query 551849 AGATTTTAAACGAAAAAAC--AAAGTTGATCTATCTACATC----TGCCAAAGCTCTTCG 551902 || || ||| |||| | | |||| |||| | | ||| ||||| | || Sbjct 6050645 TGAATTCAAAAGAAAGACCGGAAAGGATATCTCGCCAAATCCACGTGCCA------TCCG 6050698 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC-TC--AAAC 551959 ||||| |||| || || ||| | ||||| || | ||||| | || | || || | Sbjct 6050699 ACGTCTCCGAACCGCCTGTGAACGTGCCAAGAGAACACTTTC---TAGTTCATCGGAAGC 6050755 Query 551960 CACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGC 552019 |||| ||||||| ||||| | || || ||||| |||| | || | | || Sbjct 6050756 CACTGTTGAAGTGGATTCTCTTTTCGAAGGAATCGATTTGTGCTCAAAGATCACTCGTGC 6050815 Query 552020 CAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT 552079 ||| || || | ||| ||||||| || ||||||| |||||||||| | | | Sbjct 6050816 TCGATTCGAGGAACTCTGTGCTGATCTATTCCGAAAAACTCTTGAACCAGTTGCGAAGGC 6050875 Query 552080 TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 | | |||| |||| | || |||||||| | |||| | || | |||| ||||| Sbjct 6050876 TCTTCGAGACGCAAAACTCGACAAATCCAAGATTGATGAGGTCGTTTTGGTTGA-GGATC 6050934 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTT-AAGTTCTTATTTCAATGGTAAAAAATTAA 552198 ||| | |||| || |||| | ||| | ||| ||| |||||| || ||| || | | Sbjct 6050935 TACTCGTGTTCCAAAGATTCAGAAGATGCTCAAGGACTT-TTTCAACGGAAAAGAACTGA 6050993 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTC 552258 || | ||||||||||| |||||||| | || || ||| ||||||||||| | | Sbjct 6050994 ATTGCTCAATCAATCCAGATGAAGCTGTTGCATTCGGAGCTGCAGTTCAAGCAGCTGTAC 6051053 Query 552259 TTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||||||| | ||| | | | | || || | | || || |||||| |||| || Sbjct 6051054 TTTCTGGAGTCAAGGATCACACAATCAAAGATGTATTGCTGGTTGATGTTGCTCCACTGA 6051113 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 |||||| | || |||| ||| ||| | ||||| ||||| || ||| |||| || | | Sbjct 6051114 GTCTTGGAATCGAGACAGCTGGTGGTGTGATGACCAATCTCATTGATCGAAACACCAGAA 6051173 Query 552379 TTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438 |||| || ||| ||| |||| ||| ||||||||| | | || ||| Sbjct 6051174 TTCCAACAAAGGCATCGAAAACATTCACTACATATGATGATAATCAACCAGGAGTCTCAA 6051233 Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTT- 552497 ||||| | | ||||||||| | | ||| ||||| ||| ||||| || || Sbjct 6051234 TTCAAGTATACGAAGGAGAACGTGCGATGACTCGGGATAACCATCGTCTTGGAACATTCG 6051293 Query 552498 AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGAT 552557 |||| || || ||||| || ||||| || || || || || |||||||| ||||| ||| Sbjct 6051294 AATTGAGT-GGAATTCCACCAGCTCCACGAGGTGTTCCTCAGATTGAAGTCACTTTTGAT 6051352 Query 552558 ATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||||||| ||||||||| |||||||| | ||| |||||||| Sbjct 6051353 ATCGATGCAAATGGAATTCTGAATGTGTCGGCTGAGGATAAATC 6051396 Score = 206 bits (228), Expect = 2e-47 Identities = 373/536 (70%), Gaps = 12/536 (2%) Strand=Plus/Plus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||||| ||||||| |||| |||| ||| || || || |||||| | ||||| Sbjct 6043699 GTTGAAATTCTTGCCAACTCAGAAGGAAACAAAACAACGCCTTCATATGTTGCATTCACT 6043758 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| || ||||| ||||| |||||| ||||||| || ||||||| ||| Sbjct 6043759 GATACAGAACGATTGGTTGGAGATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAAT 6043818 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| ||||| || |||||| || ||||| |||| || ||||| || Sbjct 6043819 ACAGTATTCGATGCAAAACGATTGATTGGACGACGTTTTGATGAAGAAACAGTTCAATCA 6043878 Query 550232 GATATGAAGCATTGGCCTTT---CCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 || || |||||||| || | || | || |||||||| || ||| Sbjct 6043879 GACTGCAAACATTGGCCATTTGGCGTAAAAGGAAAACAA---GGAAAACCAGTGATCGAA 6043935 Query 550289 GCTACTCATGAA-GGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | ||||| ||| | ||| || |||||| |||| ||| | ||||| | Sbjct 6043936 G-TGGAAATGAAAGGAGAAAAGAGACAGTTCAATCCAGAAGAAATCTCAGCAATGGTACT 6043994 Query 550348 AATGAAAATGAAACAAACAGCCAGTG-CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 ||||||||| |||| || || | | | | || || | ||| | |||| |||| | Sbjct 6043995 TCAGAAAATGAAGGAAACTGC-AGAGACATACCTGGGACATGCAGTCAAGGATACAGTGA 6044053 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | |||||||| ||||| || || ||| || | ||||| || |||||||| | | Sbjct 6044054 TTACTGTACCTGCATACTTCAACGACAGTCAGAGACAAGCAACCAAAGATGCAGCTACCA 6044113 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||||||||| |||| | || || ||||||||||| ||||| ||||| ||||| |||| Sbjct 6044114 TTGCTGGACTCAATGCCATCCGAATCATCAATGAACCGACTGCAGCTGCTCTTGCTTATG 6044173 Query 550527 GACTTGATAAACATAATGA-TCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || | |||||| ||| | | |||| | |||||||| ||||||||| |||||| Sbjct 6044174 GATTGGATAAA-GGAATCAGTGAAGAGATGAATGTACTGATCTTTGATCTTGGAGG 6044228 Score = 203 bits (224), Expect = 3e-46 Identities = 373/536 (70%), Gaps = 13/536 (2%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||||| ||||||| |||| |||| ||| || || || |||||| | ||||| Sbjct 5575090 GTTGAAATTCTTGCCAACTCAGAAGGAAACAAAACAACGCCTTCATATGTTGCATTCACT 5575031 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| || ||||| ||||| |||||| ||||||| || ||||||| ||| Sbjct 5575030 GATACAGAACGATTGGTTGGAGATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAAT 5574971 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | | || |||| ||||| || |||||| || ||||| |||| || ||||| || Sbjct 5574970 AC-AGTATTCATGCAAAACGATTGATTGGACGACGTTTTGATGAAGAAACAGTTCAATCA 5574912 Query 550232 GATATGAAGCATTGGCCTTT---CCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 || || |||||||| || | || | || |||||||| || ||| Sbjct 5574911 GACTGCAAACATTGGCCATTTGGCGTAAAAGGAAAACAA---GGAAAACCAGTGATCGAA 5574855 Query 550289 GCTACTCATGAA-GGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | ||||| ||| | ||| || |||||| |||| ||| | ||||| | Sbjct 5574854 G-TGGAAATGAAAGGAGAAAAGAGACAGTTCAATCCAGAAGAAATCTCAGCAATGGTACT 5574796 Query 550348 AATGAAAATGAAACAAACAGCCAGTG-CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 ||||||||| |||| || || | | | | || || | ||| | ||||||||| | Sbjct 5574795 TCAGAAAATGAAGGAAACTGC-AGAGACATACCTGGGACATGCAGTCAAGGATGCAGTGA 5574737 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | |||||||| ||||| || || ||| || | ||||| || |||||||| | | Sbjct 5574736 TTACTGTACCTGCATACTTCAACGACAGTCAGAGACAAGCAACCAAAGATGCAGCTACCA 5574677 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||||||||| |||| | || || ||||||||||| ||||| ||||| ||||| |||| Sbjct 5574676 TTGCTGGACTCAATGCCATCCGAATCATCAATGAACCGACTGCAGCTGCTCTTGCTTATG 5574617 Query 550527 GACTTGATAAACATAATGA-TCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || | |||||| ||| | | |||| |||||||| ||||||||| |||||| Sbjct 5574616 GATTGGATAAA-GGAATCAGTGAAGAGAAGAATGTACTGATCTTTGATCTTGGAGG 5574562 Score = 203 bits (224), Expect = 3e-46 Identities = 373/536 (70%), Gaps = 13/536 (2%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||||| ||||||| |||| |||| ||| || || || |||||| | ||||| Sbjct 6049267 GTTGAAATTCTTGCCAACTCAGAAGGAAACAAAACAACGCCTTCATATGTTGCATTCACT 6049208 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| || ||||| ||||| |||||| ||||||| || ||||||| ||| Sbjct 6049207 GATACAGAACGATTGGTTGGAGATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAAT 6049148 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| ||||| || |||||| || ||||| |||| || ||||| || Sbjct 6049147 ACAGTATTCGATGC-AAACGATTGATTGGACGACGTTTTGATGAAGAAACAGTTCAATCA 6049089 Query 550232 GATATGAAGCATTGGCCTTT---CCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 || || |||||||| || | || | || |||||||| || ||| Sbjct 6049088 GACTGCAAACATTGGCCATTTGGCGTAAAAGGAAAACAA---GGAAAACCAGTGATCGAA 6049032 Query 550289 GCTACTCATGAA-GGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | ||||| ||| | ||| || |||||| |||| ||| | ||||| | Sbjct 6049031 G-TGGAAATGAAAGGAAAAAAGAGACAGTTCAATCCAGAAGAAATCTCAGCAATGGTACT 6048973 Query 550348 AATGAAAATGAAACAAACAGCCAGTG-CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 ||||||||| |||| || || | | | | || || | ||| | ||||||||| | Sbjct 6048972 TCAGAAAATGAAGGAAACTGC-AGAGACATACCTGGGACATGCAGTCAAGGATGCAGTGA 6048914 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | |||||||| ||||| || || ||| || | ||||| || |||||||| | | Sbjct 6048913 TTACTGTACCTGCATACTTCAACGACAGTCAGAGACAAGCAACCAAAGATGCAGCTACCA 6048854 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||||||||| |||| | || || ||||||||||| ||||| ||||| ||||| |||| Sbjct 6048853 TTGCTGGACTCAATGCCATCCGAATCATCAATGAACCGACTGCAGCTGCTCTTGCTTATG 6048794 Query 550527 GACTTGATAAACATAATGA-TCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || | |||||| ||| | | |||| |||||||| ||||||||| |||||| Sbjct 6048793 GATTGGATAAA-GGAATCAGTGAAGAGAAGAATGTACTGATCTTTGATCTTGGAGG 6048739 Score = 203 bits (224), Expect = 3e-46 Identities = 372/536 (69%), Gaps = 12/536 (2%) Strand=Plus/Plus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||||||| ||||||| |||| |||| ||| || || || |||||| | ||||| Sbjct 6049989 GTTGAAATCCTTGCCAACTCCGAAGGAAACAAAACAACGCCTTCATATGTTGCATTCACT 6050048 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| || ||||| ||||| |||||| ||||||| || ||||||| ||| Sbjct 6050049 GATACAGAACGATTGGTTGGAGATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAAT 6050108 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| ||||| || |||||| || ||||| |||| || ||||| || Sbjct 6050109 ACAGTATTCGATGCAAAACGATTGATTGGACGACGTTTTGATGAAGAAACAGTTCAATCA 6050168 Query 550232 GATATGAAGCATTGGCCTTT---CCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 || || |||||||| || | || | || |||||||| || ||| Sbjct 6050169 GACTGCAAACATTGGCCATTTGGCGTAAAAGGAAAACAA---GGAAAACCAGTGATCGAA 6050225 Query 550289 GCTACTCATGAA-GGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | ||||| ||| | ||| || |||||| |||| ||| | ||||| | Sbjct 6050226 G-TGGAAATGAAAGGAGAAAAGAGACAGTTCAATCCAGAAGAAATCTCAGCAATGGTACT 6050284 Query 550348 AATGAAAATGAAACAAACAGCCAGTG-CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 ||||||||| |||| || || | | | | || || | ||| | ||||||||| | Sbjct 6050285 TCAGAAAATGAAGGAAACTGC-AGAGACATACCTGGGACATGCAGTCAAGGATGCAGTGA 6050343 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | |||||||| ||||| || || ||| || | ||||| || |||||||| | | Sbjct 6050344 TTACTGTACCTGCATACTTCAACGACAGTCAGAGACAAGCAACCAAAGATGCAGCTACCA 6050403 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||||||||| |||| | || || ||||||||||| ||||| ||||| ||||| |||| Sbjct 6050404 TTGCTGGACTCAATGCCATCCGAATCATCAATGAACCGACTGCAGCTGCTCTTGCTTATG 6050463 Query 550527 GACTTGATAAACATAATGA-TCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || | |||||| ||| | | |||| |||||||| ||||||||| |||||| Sbjct 6050464 GATTGGATAAA-GGAATCAGTGAAGAGAAGAATGTACTGATCTTTGATCTTGGAGG 6050518 Score = 105 bits (116), Expect = 5e-17 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| ||| ||||||| |||| |||| ||| || ||||| |||||| | |||||| Sbjct 7937584 GTTGAGATTCTTGCCAACTCGGAAGGAAACAAAACCACACCATCCTATGTTGCATTCACG 7937525 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | ||||| ||| |||| ||| |||||||| | | ||||| || Sbjct 7937524 GACACAGAGAGACTCGTTGGAGATTCAGCCAAAGATCAAGCCGCCCGAAATCCAGAGCAT 7937465 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| | || ||||| || || ||||||||| |||| | || || || || |||| | Sbjct 7937464 ACTGTATTCGATGCAAAGCG----ATTGGAAGACGTTTCGACGAGTCAACAGTCCAGGAA 7937409 Query 550232 GATATGAAGCATTGGCCTTTC 550252 ||| ||||||||||| ||| Sbjct 7937408 GATTGCAAGCATTGGCCGTTC 7937388 Score = 95.1 bits (104), Expect = 1e-13 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTA-CAAGATGA-AGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||||||||| | |||| || || | ||| | ||| || ||||| || | |||| Sbjct 4173729 CTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGG--ATGTTGTAGTCCGAAAGAG 4173672 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 ||||| ||| ||||| || |||||||| || || ||||| ||||| || || || |||| Sbjct 4173671 TTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTC 4173612 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 | || || ||||| ||||| ||| || ||| || ||||| | | | || || Sbjct 4173611 CCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATC-GGAAGCCTCCACCTCC 4173553 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | |||||| || || | ||||| ||||| |||||||| Sbjct 4173552 AAGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4173509 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || ||||| || | ||||| | | ||| || ||||| |||||||| || || | |||| Sbjct 1551642 ATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTT 1551701 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| || || ||||||||||| || ||||| || || || || ||| || ||| Sbjct 1551702 TGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTA 1551761 Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | | | | | |||||| | || || ||||| || ||||| || ||||| ||||| Sbjct 1551762 TCGGAG-GCCTCGACTTCGAGGGGAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTG 1551820 Query 563472 CAT 563474 ||| Sbjct 1551821 CAT 1551823 Score = 91.5 bits (100), Expect = 1e-12 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 930661 TAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTA 930720 || |||||||||| || ||||| || ||||| ||||||||| ||||||||||||| |||| Sbjct 5726617 TAGTTGATTTTTCGTCGCCAAACATCGCCAAGGAAATGCATGTTGGACATTTGCGATCTA 5726676 Query 930721 CCATTATTGGAGAATCTTTATGTAG 930745 | || |||||||| || | ||||| Sbjct 5726677 CAATCATTGGAGATTCCATTTGTAG 5726701 >seq9 Length=17485439 Score = 132 bits (146), Expect = 4e-25 Identities = 195/273 (71%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 550314 AATTTTCAC--CAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAG 550371 ||| ||||| ||||| |||| || || |||||| | |||| ||||| |||| ||| Sbjct 504437 AATCTTCACTCCAGAAGAAATCTCCTCCATGGTTCTGCTGAAGATGAAGGAAACCGCCGA 504496 Query 550372 TGCTTTTGTTGGTCAAGAA--GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAAT 550429 ||||| | || ||| | || | ||| || || || || |||||||| || || || Sbjct 504497 GGCTTTCCTCGG--AAGCACCGTCAAGGACGCCGTTATCACCGTACCAGCCTACTTCAAC 504554 Query 550430 GACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGT 550489 || || || ||||||||||| || ||||| ||| ||| | ||||| || ||||||||| Sbjct 504555 GATTCGCAGCGTCAAGCTACCAAGGATGCCGGAGCTATCTCCGGACTCAACGTTCTTCGT 504614 Query 550490 ATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAA 550549 || ||||| || || |||||||| || | || || ||||| || || | | | | Sbjct 504615 ATCATCAACGAGCCAACTGCTGCCGCTATCGCCTACGGACTCGACAAGAAGGGAGCTGGA 504674 Query 550550 GAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 |||| || || ||||| || ||| ||||||| Sbjct 504675 GAACGCAACGTTCTCATTTTCGATCTTGGAGGT 504707 >seq11 Length=19495157 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| ||||| || ||||| || || ||||||||||| || || || || |||| ||| Sbjct 1838969 ACTGTTCCAGCCTACTTTAACGATTCTCAACGTCAAGCCACCAAGGACGCCGGACAAATT 1839028 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||||| || ||||||||| | ||||| || || ||||| ||||| ||||| || ||| Sbjct 1839029 TCTGGACTCAACGTTCTTCGTGTGATCAACGAGCCAACTGCCGCTGCTCTTGCTTACGGA 1839088 Query 550529 CTTGATAAA 550537 | || ||| Sbjct 1839089 TTAGACAAA 1839097 >seq1 Length=15455979 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||||||||| || || ||||| || || || ||||| ||||| |||||||||||||| Sbjct 1831767 GGATGCAGTGATTACAGTACCCGCCTACTTCAATGATAGCCAACGGCAAGCTACTAAAGA 1831708 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 || | |||||||| || |||| |||| || |||||||| || ||||| || || Sbjct 1831707 CGCAGCTACCATTGCTGGTCTCAATGCGATTCGAATCATCAATGAGCCAACTGCAGCCGC 1831648 Query 550516 ACTTGCATATGGACTTGATAA 550536 | || |||||| | || || Sbjct 1831647 CTTGGCTTATGGATTAGACAA 1831627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029276591384830