Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 >seq5 Length=14578851 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || | ||| || || || || ||||| || |||||||| | Sbjct 4175477 CCTCCACGGAGACGAAGGACAAGATGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGAC 4175418 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| ||||||||||| || || || || | | |||||| || || || Sbjct 4175417 AGGGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 4175358 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || || || || |||| | |||||||| | ||| ||| Sbjct 4175357 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACT 4175298 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || || || || | ||| || || || |||||||| Sbjct 4175297 TCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 4175251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276627521019