Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5 150 3e-31 >seq5 Length=14578851 Score = 150 bits (166), Expect = 3e-31 Identities = 211/288 (73%), Gaps = 10/288 (3%) Strand=Plus/Plus Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||| ||||| | || | || |||||||||||||| | ||||| || || ||||| Sbjct 11386023 ACCTGGCATCAGACCGCGCTTCTTGAGCCAGAAAATCGATGCGAACGATCCGCTAAAGAA 11386082 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||||||||| || || ||||| ||| | |||| || |||| || || || |||| || Sbjct 11386083 GATGCCCTCGACGGCGGCGAATGCGATCAGCCGTTCGGCGAACGAGGCCTTGGTGTCGGA 11386142 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCA-TGGCA-TCGTCTCTATGGCC 48367 ||||| |||||||||||| ||||||||||||||| | | | | ||| ||||| Sbjct 11386143 AATCCAACGAAGCGCCCAGTCGGCCTTCTTCTTGATGAACTCGAACTCG--AAGATGGCG 11386200 Query 48368 CGGAAGAGCTTCTTGCACTCACCTGCGTC--CGC-AACATAGGTAGTGAGCAGCTTTGCG 48424 ||| |||||| ||| || ||| | || ||| | ||||| || ||||||| | Sbjct 11386201 TTGAACAGCTTCATGCGCT--CCTTC-TCATCGCGGATGTAGGTCTCGATGAGCTTTGAG 11386257 Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAG 48472 |||||||| ||||| | |||||| || ||||| ||||| ||||||||| Sbjct 11386258 TACATCTCCGAGTGAATATTCTCGATGGCGATTTGGAATCCGTAGAAG 11386305 Score = 134 bits (148), Expect = 3e-26 Identities = 395/604 (65%), Gaps = 11/604 (2%) Strand=Plus/Minus Query 213812 GACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCC--TC 213869 ||| | || |||||| || || || ||||| || || ||||| ||| | | | || Sbjct 9911081 GACGCGCTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAACAAGTCACGAGCACGTTC 9911022 Query 213870 CTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCAC 213929 |||| || ||| | ||| || || ||| | | ||| || ||||| || |||||||| Sbjct 9911021 CTCT--TCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAGATATCGGCGTGCCAT 9910964 Query 213930 GGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTG 213986 ||||||| ||||||||| || || || || | ||| || || || || || | Sbjct 9910963 GGCTCCAAGTAGATGGCGAATGCTCCTGGTCGTTTGTTACCTCCTTGATCAACGTAACGA 9910904 Query 213987 GCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCC 214046 || ||||| ||| || || | |||| || || ||||| ||| |||||||| Sbjct 9910903 GCGGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGATGTTCCATTGGTTCCG 9910844 Query 214047 GCTATATACGAGCCGGAGGCCCTCAGGTTG--CTCATGGAGAGCCCTATGCCACCGGCGT 214104 || || ||||| | || | | ||| | ||| |||| || ||||| || || Sbjct 9910843 GCAATCACTGAGCCAGTTGCACGGATCTTGTGCACATTGAGA--CCGATGCCTCCAGCAC 9910786 Query 214105 ACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTG 214164 ||| || |||| ||||| || ||| ||| || ||| ||| || ||| || Sbjct 9910785 TCTTCGAAATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCGAGAATCGAGTCCTCGC 9910726 Query 214165 TGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCG 214224 | | ||| ||||||||| || | ||| || | | ||| ||||||||||| || | Sbjct 9910725 TCATCGTCAACAAGAAGCATGAAGACATCTGTGGACGGCACGTTCCAGAGTTGAAGAGAG 9910666 Query 214225 TGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGG 214284 | || |||||| |||| || | || | | |||| ||||| | | | | || Sbjct 9910665 TTGGAGAGGCATGTGTCATGTACCGTTCGGACATCAAGTTGTACGTCTCAATGGCGGCGG 9910606 Query 214285 GGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTA 214344 ||||| | |||||| | ||| | ||||||||| ||||| || || || | Sbjct 9910605 AAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAGCATTTGCTGTGGTCTTTCGA 9910546 Query 214345 TGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGG 214404 | | | ||| | |||||| |||||||| ||||| || |||||||| || ||||||| Sbjct 9910545 CGACTTCCTTGTTGATCTTGAGAAGGTAGGAACGCTCGAGCGTCTTGAATCCGAAGTAGG 9910486 Query 214405 AGTA 214408 ||| Sbjct 9910485 TGTA 9910482 Score = 132 bits (146), Expect = 9e-26 Identities = 338/510 (66%), Gaps = 31/510 (6%) Strand=Plus/Minus Query 212552 CACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTT 212611 ||| ||||| || || | | |||| | |||||| || | |||||||| || ||||| Sbjct 9912583 CACGGTAAATTGAACGGCGTTGACAGCTGGCTTGGTACGCAAGTAGTACATTCCAGTCTT 9912524 Query 212612 TAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTC--AGCTTAATATTC 212669 || ||||| ||| |||| | |||||||| ||||| | | | ||||| Sbjct 9912523 GAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGA-TGGCGGCGTAGCTT------- 9912472 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 || | ||||| | || | ||| || ||||| || || ||||||| | Sbjct 9912471 -GG-------CTTGGCCATG-TGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCA 9912421 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | || || ||||| || || || || |||| |||| |||||| ||||| | | | Sbjct 9912420 CGATCGGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGC 9912361 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGC 212849 || |||| || ||||| | || ||||||||||| | || || ||| ||| | Sbjct 9912360 TCCTTGATATCGTCTGGAATTCCTGGGATGTTCTGAATCGATCCATTGT---TGGCAA-- 9912306 Query 212850 TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGG 212903 || ||||| ||| || ||| |||| | || || ||| ||| | || | Sbjct 9912305 TG-AGGCGGTTCTTCATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATG 9912247 Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 || |||||||| || ||||||||||| |||||||| | | ||| | ||| || ||| Sbjct 9912246 TGTGGGTTGACGATTTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTG 9912187 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 || ||||| || |||||||| || || ||||| || ||| || || ||||| ||| Sbjct 9912186 TATGGCTCAATCGATTCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGA 9912127 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGC 213053 |||| ||||||||||| | ||||| ||| Sbjct 9912126 GCCATGAGGAGACTGTTGCGAACTCCATGC 9912097 Score = 114 bits (126), Expect = 2e-20 Identities = 358/537 (67%), Gaps = 33/537 (6%) Strand=Plus/Minus Query 213119 CCACATGTCAAACTGCAAGATG-CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGG 213177 |||||| |||||||| ||| || || ||| || || |||| || | ||||| | Sbjct 9911993 CCACATATCAAACTG-AAGTTGTCCCTTGGAAACTGGAGATCCCTCATATGTAGAGTATG 9911935 Query 213178 GGCCATGCTCCTTG-GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCA 213236 | |||| ||| || |||| |||||| || | || ||||||||||||||||| || Sbjct 9911934 GTCCAT-CTCTTTCAGCCAACTCGCAACTAGCTTCCAATGCAGCGTAGTAGATGGTCTCG 9911876 Query 213237 AATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGG------GCATCATCATG 213290 || || | ||||||| | |||||| ||| || ||||| | |||||| ||| Sbjct 9911875 AAGATTCTCTTGTTGAGATCTCTGGCCTGTGGAGATGTGAATGGATAACGCATCAACAT- 9911817 Query 213291 CGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTA 213350 ||| ||||| || || || || |||| ||||| || | || | || ||| Sbjct 9911816 -----GAAGCAGTCAGCGAGTCCTTGAACTCCGAGACCGATTGGACGATGGCGCATGTTC 9911762 Query 213351 GACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCG 213409 || ||| |||| ||| || | || ||| ||||| ||| ||||||||||| || || Sbjct 9911761 GAGTTGCGAGC-CTCTTCAATTGGATAATAGTTGACGTCAATGATCTTGTTCAGATTCTT 9911703 Query 213410 GGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTG 213469 || || ||||| || | || || | | | |||| | | ||| Sbjct 9911702 TGTTATGACCTTGGTCACCTCAGCGAGCTTGACAAAGTCGAACTTTTTG---TCGTTAGT 9911646 Query 213470 CAC-AAACTCAGG--CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC--CTGAGAG 213524 ||| |||| || || || || || || |||||||| || ||||| ||| ||| Sbjct 9911645 CACGAAAC---GGTTCAAAGCAATAGAAGCGAGATTGCAAACAGCAACCTCGTCTG-GAG 9911590 Query 213525 TCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGG 213584 | | |||||| || ||||| ||||||| |||| ||| ||| || |||| ||| || Sbjct 9911589 -CAGAGTACTCGATAATCTCAGTGCACAAGTTGGAGCACTTGATAGTTCCCAAGTTTTGC 9911531 Query 213585 TGGTTTGACTTTGCG-TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 ||||| ||| ||||| ||||| | |||||||||| ||||| || |||||||| Sbjct 9911530 TGGTTCGAC-TTGCGATTGGCGGCATCCTTGTAGGTGATGTATGGAAGTCCGGTCTC 9911475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528526593280