Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5 129 1e-24 >seq5 Length=14578851 Score = 129 bits (142), Expect = 1e-24 Identities = 286/420 (68%), Gaps = 27/420 (6%) Strand=Plus/Minus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGGAGAAGT 221481 ||||||| |||||||||||| ||||| |||||||||| |||| |||||| ||||| || Sbjct 9911896 GCAGCGTAGTAGATGGTCTCGAAGATTCTCTTGTTGAGATCTC-TGGCCTGTGGAGATGT 9911838 Query 221482 GAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGG 221541 ||| || ||||| || | ||| ||| || ||||| || ||||||| |||||| || Sbjct 9911837 GAATGGATAACGCATCAACATGAAGCAGTCAGCGAGTCCTTGAACTCCGAGACCGATTGG 9911778 Query 221542 CCTGTGTCTCCTGTTGGA--AGCG-GCCGCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 | || | | |||| || ||| ||| |||| | |||||| |||||||||| || Sbjct 9911777 ACGATGGCGCATGTTCGAGTTGCGAGCCTCTTC---AATTGGATAATAGTTGACGTCAAT 9911721 Query 221599 CAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAA 221658 | ||||| || ||| || ||||| || |||||| | |||| ||| || Sbjct 9911720 GATCTTGTTCAGATTCTTTGTTATGACCTTGGTCACCTCAGCGAGCT-----TGA-CAAA 9911667 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 | |||| | ||| | | ||| ||| ||| | |||| || || Sbjct 9911666 GTCGAACTTTTTGTCGT--TAG-------TCACGAAACGGTTCAAAGCAATAGAAGCGAG 9911616 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAGAGGTTG 221776 || || || || |||||||| || | | |||| || ||||| || || | |||| Sbjct 9911615 ATTGCAAACAGCAACCTCGTC--TGGAGCAGAGTACTCGATAATCTCAGTGCACAAGTTG 9911558 Query 221777 CTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAG 221836 ||||||||| || |||| || | || || |||||||||||||| || ||||||||| Sbjct 9911557 GAGCACTTGATAGTTCCCAAGTTTTGCTGGTTCGACTTGCGATTGGCGGCATCCTTGTAG 9911498 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || ||||| | || ||||| ||| |||| | |||||| ||| || | Sbjct 9912292 CATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGACGAT 9912233 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 |||||| || || |||||||| | | ||| | ||| || ||| | || || || Sbjct 9912232 TTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAATCGA 9912173 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 |||||||| || ||||||||||| ||| || || ||||| || |||| || ||||| Sbjct 9912172 TTCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAGCCATGAGGAGACT 9912113 Query 221245 GTTGCGCAGTCC 221256 |||||| | ||| Sbjct 9912112 GTTGCGAACTCC 9912101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840538924480