Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5 235 4e-56 seq9 109 4e-18 seq272 102 5e-16 seq11 96.9 2e-14 seq13 95.1 8e-14 seq1 93.3 3e-13 >seq5 Length=14578851 Score = 235 bits (260), Expect = 4e-56 Identities = 492/715 (69%), Gaps = 30/715 (4%) Strand=Plus/Minus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTC--AAAC 475542 ||||||| |||| || ||||||||||| ||| || | |||||| ||| || || | Sbjct 5574382 GACGTCTCCGAACCGCCTGTGAACGTGCCAAGAGAACACTTTCTA--GCTCATCGGAAGC 5574325 Query 475543 TACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTA--TTACAAGG 475600 ||||||||||| |||||||| || |||||||| |||| | ||| | | || | Sbjct 5574324 CACTGTTGAAGTGGATTCTCTATTCGAAGGAATCGATTTG--TGCTCAAAGATCACTCGT 5574267 Query 475601 GCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAA 475660 ||| ||| || || | ||| ||||||| || ||||||| ||||||| ||||| | Sbjct 5574266 GCTCGATTCGAGGAACTCTGTGCTGATCTTTTCCGAAAAACTCTTGAACCAGTTGAGAAG 5574207 Query 475661 GTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGT 475720 | ||| ||||| | || || |||||||| | | ||||| | ||| | || ||||| Sbjct 5574206 GCTCTTCGAGATGCAAAGCTCGACAAATCCAACATTGATGAAGTCGTTTTGGTTGGAGGA 5574147 Query 475721 TCAACAAGAATTCCAAAAATAAGAGAA-ATGCTTTCATCATATTTTAATGGTAAA--AAG 475777 || || | ||||||| || |||| ||||| || | |||| | | ||| || Sbjct 5574146 TCTACTCGTGTTCCAAAGATTC-AGAAGATGCTC-CAGGACTTTTTCAACGGAAAGGAAC 5574089 Query 475778 TTAAATGA--AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAG 475835 | || || || | ||||| |||||||||||||||| |||||||| || ||||||| Sbjct 5574088 TGAATTGCTCAA---TCAATCCAGATGAAGCTGTTGCATTCGGAGCTGCAGTTCAAGCAG 5574032 Query 475836 CTATTTTATCAGG--TCAA---TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGT 475890 || | | || || |||| ||| || | || | || ||||| || |||||||| Sbjct 5574031 CTGTACTTTCTGGAGTCAAGGATCAAACAATCAA--AGATG-TATTG--CTGGTTGACGT 5573977 Query 475891 AACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAG 475950 ||||||| | || | || |||| ||| || | ||||| ||||| ||||| | Sbjct 5573976 TGCTCCACTGAGTCTTGGAATCGAGACAGCTGGTGGTGTGATGACCAATCTCATTGATCG 5573917 Query 475951 AAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAAC 476010 ||| || || ||| || ||||||| ||| | || || | ||||||||| | Sbjct 5573916 AAACACCAGAATTCCAACAAAGGCATCAAAAACATTCACTACATACGCCGATAATCAACC 5573857 Query 476011 AACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACT 476070 | || | || ||| | | ||||| ||| || | ||| ||||| | || Sbjct 5573856 AGGAGTCTCAATTCAAGTATACGAAGGAGAACGAGCCATGACTCGGGATAACCATCGTCT 5573797 Query 476071 TGGAACTTTTAATCTTGAA-GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAG 476129 |||||| || | |||| || ||||| || ||||| |||| |||||||| ||||||| Sbjct 5573796 TGGAACATTCGAA-TTGAGTGGAATTCCACCAGCTCCACGAGGTGTTCCTCAGATTGAAG 5573738 Query 476130 TTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 | ||||||||||| ||||||||||| ||||| ||||| | ||| |||||||| Sbjct 5573737 TCACTTTTGATATCGATGCAAATGGAATTCTGAATGTGTCAGCTGAGGATAAATC 5573683 Score = 235 bits (260), Expect = 4e-56 Identities = 492/715 (69%), Gaps = 30/715 (4%) Strand=Plus/Minus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTC--AAAC 475542 ||||||| |||| || ||||||||||| ||| || | |||||| ||| || || | Sbjct 6048559 GACGTCTCCGAACCGCCTGTGAACGTGCCAAGAGAACACTTTCTA--GCTCATCGGAAGC 6048502 Query 475543 TACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTA--TTACAAGG 475600 ||||||||||| |||||||| || |||||||| |||| | ||| | | || | Sbjct 6048501 CACTGTTGAAGTGGATTCTCTATTCGAAGGAATCGATTTG--TGCTCAAAGATCACTCGT 6048444 Query 475601 GCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAA 475660 ||| ||| || || | ||| ||||||| || ||||||| ||||||| ||||| | Sbjct 6048443 GCTCGATTCGAGGAACTCTGTGCTGATCTTTTCCGAAAAACTCTTGAACCAGTTGAGAAG 6048384 Query 475661 GTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGT 475720 | ||| ||||| | || || |||||||| | | ||||| | ||| | || ||||| Sbjct 6048383 GCTCTTCGAGATGCAAAGCTCGACAAATCCAACATTGATGAAGTCGTTTTGGTTGGAGGA 6048324 Query 475721 TCAACAAGAATTCCAAAAATAAGAGAA-ATGCTTTCATCATATTTTAATGGTAAA--AAG 475777 || || | ||||||| || |||| ||||| || | |||| | | ||| || Sbjct 6048323 TCTACTCGTGTTCCAAAGATTC-AGAAGATGCTC-CAGGACTTTTTCAACGGAAAGGAAC 6048266 Query 475778 TTAAATGA--AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAG 475835 | || || || | ||||| |||||||||||||||| |||||||| || ||||||| Sbjct 6048265 TGAATTGCTCAA---TCAATCCAGATGAAGCTGTTGCATTCGGAGCTGCAGTTCAAGCAG 6048209 Query 475836 CTATTTTATCAGG--TCAA---TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGT 475890 || | | || || |||| ||| || | || | || ||||| || |||||||| Sbjct 6048208 CTGTACTTTCTGGAGTCAAGGATCAAACAATCAA--AGATG-TATTG--CTGGTTGACGT 6048154 Query 475891 AACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAG 475950 ||||||| | || | || |||| ||| || | ||||| ||||| ||||| | Sbjct 6048153 TGCTCCACTGAGTCTTGGAATCGAGACAGCTGGTGGTGTGATGACCAATCTCATTGATCG 6048094 Query 475951 AAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAAC 476010 ||| || || ||| || ||||||| ||| | || || | ||||||||| | Sbjct 6048093 AAACACCAGAATTCCAACAAAGGCATCAAAAACATTCACTACATACGCCGATAATCAACC 6048034 Query 476011 AACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACT 476070 | || | || ||| | | ||||| ||| || | ||| ||||| | || Sbjct 6048033 AGGAGTCTCAATTCAAGTATACGAAGGAGAACGAGCCATGACTCGGGATAACCATCGTCT 6047974 Query 476071 TGGAACTTTTAATCTTGAA-GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAG 476129 |||||| || | |||| || ||||| || ||||| |||| |||||||| ||||||| Sbjct 6047973 TGGAACATTCGAA-TTGAGTGGAATTCCACCAGCTCCACGAGGTGTTCCTCAGATTGAAG 6047915 Query 476130 TTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 | ||||||||||| ||||||||||| ||||| ||||| | ||| |||||||| Sbjct 6047914 TCACTTTTGATATCGATGCAAATGGAATTCTGAATGTGTCAGCTGAGGATAAATC 6047860 Score = 219 bits (242), Expect = 3e-51 Identities = 488/713 (68%), Gaps = 27/713 (4%) Strand=Plus/Plus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 ||||||| |||| || ||||||||||| ||| || | |||||| | | | || | | Sbjct 6050698 GACGTCTCCGAACCGCCTGTGAACGTGCCAAGAGAACACTTTCTAGTTCATCGGAAGCCA 6050757 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTA--TTACAAGGGC 475602 |||||||||| ||||||||||| |||||||| |||| | ||| | | || | || Sbjct 6050758 CTGTTGAAGTGGATTCTCTTTTCGAAGGAATCGATTTG--TGCTCAAAGATCACTCGTGC 6050815 Query 475603 TAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT 475662 | ||| || || | ||| ||||||| || ||||||| ||||||| |||| | | Sbjct 6050816 TCGATTCGAGGAACTCTGTGCTGATCTATTCCGAAAAACTCTTGAACCAGTTGCGAAGGC 6050875 Query 475663 TCTCAGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTT 475721 ||| |||| | ||||| |||||||| |||| | |||| | ||| | || | ||| | Sbjct 6050876 TCTTCGAGACGCAAAACTCGACAAATC-CAAGATTGATGAGGTCGTTTTGGTTG-AGGAT 6050933 Query 475722 CAACAAGAATTCCAAAAATAAGAGAA-ATGCTTTCATCATATTTTAATGGTAAA-AAGTT 475779 | || | ||||||| || |||| ||||| | ||| || || ||| || | Sbjct 6050934 CTACTCGTGTTCCAAAGATTC-AGAAGATGCTCAAGGACTTTTTCAACGGAAAAGAACTG 6050992 Query 475780 AAATGA--AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCT 475837 || || || | ||||| |||||||||||||||| |||||||| || ||||||||| Sbjct 6050993 AATTGCTCAA---TCAATCCAGATGAAGCTGTTGCATTCGGAGCTGCAGTTCAAGCAGCT 6051049 Query 475838 ATTTTATCAGG--TCAA---TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAA 475892 | | || || |||| ||| || | || | || ||||| || ||||| || Sbjct 6051050 GTACTTTCTGGAGTCAAGGATCACACAATCAA--AGATG-TATTG--CTGGTTGATGTTG 6051104 Query 475893 CTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAA 475952 ||||||| | || | || |||| ||| || | ||||| ||||| ||||| ||| Sbjct 6051105 CTCCACTGAGTCTTGGAATCGAGACAGCTGGTGGTGTGATGACCAATCTCATTGATCGAA 6051164 Query 475953 ATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAA 476012 | || || ||| || ||| ||| ||| | || ||| |||||||||| || Sbjct 6051165 ACACCAGAATTCCAACAAAGGCATCGAAAACATTCACTACATATGATGATAATCAACCAG 6051224 Query 476013 CTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTG 476072 || | || ||| | | ||||| ||| | | ||| ||||| | |||| Sbjct 6051225 GAGTCTCAATTCAAGTATACGAAGGAGAACGTGCGATGACTCGGGATAACCATCGTCTTG 6051284 Query 476073 GAACTTTTAATCTTGAA-GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTT 476131 |||| || | |||| || ||||| || ||||| |||| |||||||| |||||||| Sbjct 6051285 GAACATTCGAA-TTGAGTGGAATTCCACCAGCTCCACGAGGTGTTCCTCAGATTGAAGTC 6051343 Query 476132 ACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 ||||||||||| ||||||||||| ||||| ||||| | ||| |||||||| Sbjct 6051344 ACTTTTGATATCGATGCAAATGGAATTCTGAATGTGTCGGCTGAGGATAAATC 6051396 Score = 203 bits (224), Expect = 2e-46 Identities = 378/541 (70%), Gaps = 22/541 (4%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||| | |||| || | |||||| || ||||||||| | || ||| Sbjct 6049989 GTTGAAATCCTTGCCAACTCCGAAGGAAACAAAACAACGCCTTCATATGTTGCATTCACT 6050048 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || |||| | |||||||||| || ||| ||||||| || |||||| | ||| Sbjct 6050049 GATACAGAACGATTGGTTGGAGATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAAT 6050108 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || ||||| ||| |||||||||| || ||||||||| || || ||||| Sbjct 6050109 ACAGTATTCGATGCAAAACGATTGATTGGACGACGTTTTGATGAAGAAACAGTTCAATCA 6050168 Query 474569 GATATGCGT-CATTGGCCTTTTAAGGTGATAAATGTTGGT--GGTAAACCATATATAGAA 474625 || ||| |||||||| ||| || | ||| | || |||||| || ||| Sbjct 6050169 GAC-TGCAAACATTGGCCATTT--GGCGTAAAAGGAAAACAAGGAAAACCAGTGATCGAA 6050225 Query 474626 GC---AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT- 474681 | ||| | ||| |||| | ||| || || ||| |||| || ||||||| Sbjct 6050226 GTGGAAATGAA---AGGAGAAAAGAGACAGTTCAATCCAGAAGAAATCTCAGCAATGGTA 6050282 Query 474682 -TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 || || |||||||| |||| || ||| |||| || ||||| | ||| | |||||| Sbjct 6050283 CTTCAG--AAAATGAAGGAAACTGCAGAGA-CATACCTGGGACATGCAGTCAAGGATGCA 6050339 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || |||||||| || ||||| || || || ||| | |||||||| |||||||| | Sbjct 6050340 GTGATTACTGTACCTGCATACTTCAACGACAGTCAGAGACAAGCAACCAAAGATGCAGCT 6050399 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | ||||| || || |||| | || || || |||||||| || ||||| || |||||| Sbjct 6050400 ACCATTGCTGGACTCAATGCCATCCGAATCATCAATGAACCGACTGCAGCTGCTCTTGCT 6050459 Query 474860 TATGGTCTTGAT-AAGAATTCTGACAA-AGAAGTAAATGTTTTAATCTTTGATTGTGGAG 474917 ||||| | ||| ||| | || | || ||||| ||||| | ||||||||| ||||| Sbjct 6050460 TATGGATTGGATAAAGGAATCAGTGAAGAGAAG--AATGTACTGATCTTTGATCTTGGAG 6050517 Query 474918 G 474918 | Sbjct 6050518 G 6050518 Score = 194 bits (214), Expect = 1e-43 Identities = 377/541 (70%), Gaps = 23/541 (4%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||| |||| || | |||||| || ||||||||| | || ||| Sbjct 5575090 GTTGAAATTCTTGCCAACTCAGAAGGAAACAAAACAACGCCTTCATATGTTGCATTCACT 5575031 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || |||| | |||||||||| || ||| ||||||| || |||||| | ||| Sbjct 5575030 GATACAGAACGATTGGTTGGAGATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAAT 5574971 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | | || |||| ||| |||||||||| || ||||||||| || || ||||| Sbjct 5574970 AC-AGTATTCATGCAAAACGATTGATTGGACGACGTTTTGATGAAGAAACAGTTCAATCA 5574912 Query 474569 GATATGCGT-CATTGGCCTTTTAAGGTGATAAATGTTGGT--GGTAAACCATATATAGAA 474625 || ||| |||||||| ||| || | ||| | || |||||| || ||| Sbjct 5574911 GAC-TGCAAACATTGGCCATTT--GGCGTAAAAGGAAAACAAGGAAAACCAGTGATCGAA 5574855 Query 474626 GC---AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT- 474681 | ||| | ||| |||| | ||| || || ||| |||| || ||||||| Sbjct 5574854 GTGGAAATGAA---AGGAGAAAAGAGACAGTTCAATCCAGAAGAAATCTCAGCAATGGTA 5574798 Query 474682 -TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 || || |||||||| |||| || ||| |||| || ||||| | ||| | |||||| Sbjct 5574797 CTTCAG--AAAATGAAGGAAACTGCAGAGA-CATACCTGGGACATGCAGTCAAGGATGCA 5574741 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || |||||||| || ||||| || || || ||| | |||||||| |||||||| | Sbjct 5574740 GTGATTACTGTACCTGCATACTTCAACGACAGTCAGAGACAAGCAACCAAAGATGCAGCT 5574681 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | ||||| || || |||| | || || || |||||||| || ||||| || |||||| Sbjct 5574680 ACCATTGCTGGACTCAATGCCATCCGAATCATCAATGAACCGACTGCAGCTGCTCTTGCT 5574621 Query 474860 TATGGTCTTGAT-AAGAATTCTGACAA-AGAAGTAAATGTTTTAATCTTTGATTGTGGAG 474917 ||||| | ||| ||| | || | || ||||| ||||| | ||||||||| ||||| Sbjct 5574620 TATGGATTGGATAAAGGAATCAGTGAAGAGAAG--AATGTACTGATCTTTGATCTTGGAG 5574563 Query 474918 G 474918 | Sbjct 5574562 G 5574562 Score = 190 bits (210), Expect = 1e-42 Identities = 374/540 (69%), Gaps = 20/540 (4%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||| |||| || | |||||| || ||||||||| | || ||| Sbjct 6043699 GTTGAAATTCTTGCCAACTCAGAAGGAAACAAAACAACGCCTTCATATGTTGCATTCACT 6043758 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || |||| | |||||||||| || ||| ||||||| || |||||| | ||| Sbjct 6043759 GATACAGAACGATTGGTTGGAGATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAAT 6043818 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || ||||| ||| |||||||||| || ||||||||| || || ||||| Sbjct 6043819 ACAGTATTCGATGCAAAACGATTGATTGGACGACGTTTTGATGAAGAAACAGTTCAATCA 6043878 Query 474569 GATATGCGT-CATTGGCCTTTTAAGGTGATAAATGTTGGT--GGTAAACCATATATAGAA 474625 || ||| |||||||| ||| || | ||| | || |||||| || ||| Sbjct 6043879 GAC-TGCAAACATTGGCCATTT--GGCGTAAAAGGAAAACAAGGAAAACCAGTGATCGAA 6043935 Query 474626 GC---AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT- 474681 | ||| | ||| |||| | ||| || || ||| |||| || ||||||| Sbjct 6043936 GTGGAAATGAA---AGGAGAAAAGAGACAGTTCAATCCAGAAGAAATCTCAGCAATGGTA 6043992 Query 474682 -TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 || || |||||||| |||| || ||| |||| || ||||| | ||| | ||| || Sbjct 6043993 CTTCAG--AAAATGAAGGAAACTGCAGAGA-CATACCTGGGACATGCAGTCAAGGATACA 6044049 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || |||||||| || ||||| || || || ||| | |||||||| |||||||| | Sbjct 6044050 GTGATTACTGTACCTGCATACTTCAACGACAGTCAGAGACAAGCAACCAAAGATGCAGCT 6044109 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | ||||| || || |||| | || || || |||||||| || ||||| || |||||| Sbjct 6044110 ACCATTGCTGGACTCAATGCCATCCGAATCATCAATGAACCGACTGCAGCTGCTCTTGCT 6044169 Query 474860 TATGGTCTTGAT-AAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 ||||| | ||| ||| | || | |||| | ||||| | ||||||||| |||||| Sbjct 6044170 TATGGATTGGATAAAGGAATCAG-TGAAGAGATGAATGTACTGATCTTTGATCTTGGAGG 6044228 Score = 190 bits (210), Expect = 1e-42 Identities = 376/541 (70%), Gaps = 23/541 (4%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||| |||| || | |||||| || ||||||||| | || ||| Sbjct 6049267 GTTGAAATTCTTGCCAACTCAGAAGGAAACAAAACAACGCCTTCATATGTTGCATTCACT 6049208 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || |||| | |||||||||| || ||| ||||||| || |||||| | ||| Sbjct 6049207 GATACAGAACGATTGGTTGGAGATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAAT 6049148 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || ||||| ||| |||||||||| || ||||||||| || || ||||| Sbjct 6049147 ACAGTATTCGATGC-AAACGATTGATTGGACGACGTTTTGATGAAGAAACAGTTCAATCA 6049089 Query 474569 GATATGCGT-CATTGGCCTTTTAAGGTGATAAATGTTGGT--GGTAAACCATATATAGAA 474625 || ||| |||||||| ||| || | ||| | || |||||| || ||| Sbjct 6049088 GAC-TGCAAACATTGGCCATTT--GGCGTAAAAGGAAAACAAGGAAAACCAGTGATCGAA 6049032 Query 474626 GC---AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT- 474681 | ||| | ||| ||| | ||| || || ||| |||| || ||||||| Sbjct 6049031 GTGGAAATGAA---AGGAAAAAAGAGACAGTTCAATCCAGAAGAAATCTCAGCAATGGTA 6048975 Query 474682 -TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 || || |||||||| |||| || ||| |||| || ||||| | ||| | |||||| Sbjct 6048974 CTTCAG--AAAATGAAGGAAACTGCAGAGA-CATACCTGGGACATGCAGTCAAGGATGCA 6048918 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || |||||||| || ||||| || || || ||| | |||||||| |||||||| | Sbjct 6048917 GTGATTACTGTACCTGCATACTTCAACGACAGTCAGAGACAAGCAACCAAAGATGCAGCT 6048858 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | ||||| || || |||| | || || || |||||||| || ||||| || |||||| Sbjct 6048857 ACCATTGCTGGACTCAATGCCATCCGAATCATCAATGAACCGACTGCAGCTGCTCTTGCT 6048798 Query 474860 TATGGTCTTGAT-AAGAATTCTGACAA-AGAAGTAAATGTTTTAATCTTTGATTGTGGAG 474917 ||||| | ||| ||| | || | || ||||| ||||| | ||||||||| ||||| Sbjct 6048797 TATGGATTGGATAAAGGAATCAGTGAAGAGAAG--AATGTACTGATCTTTGATCTTGGAG 6048740 Query 474918 G 474918 | Sbjct 6048739 G 6048739 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||| ||||||||||| || || | ||||| ||||| || || ||||||||||| Sbjct 4175178 ATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTT 4175119 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| |||||| |||||||| || | | || ||||| || Sbjct 4175118 GTCTTGGATCTTAGCCTTGACATTCTCAATAGTGTCCGAAGCTTCGACCTCGAGGGTGAT 4175059 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || ||||| || ||||| ||||| || || Sbjct 4175058 AGTCTTTCCGGTAAGCGTCTTGACGAAGATCTG 4175026 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| ||||| ||||| | || || ||||| || ||||||||||||||||| || ||||| Sbjct 4174390 CTTACCAGCGAAAATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTT 4174331 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 |||||| ||||||||| || | | | | ||||| || ||||| || || || Sbjct 4174330 GGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCAAGAGTGATAGTCTTTCCAGT 4174271 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 ||||| || |||||||| || Sbjct 4174270 AAGAGTTTTCACGAAAATCTG 4174250 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || ||||||||||| || || || | | ||| || || || |||||||||||||| Sbjct 1551668 ATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTT 1551727 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| |||||| || || ||||| | | ||| |||| ||| Sbjct 1551728 GTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAAT 1551787 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || |||||||| ||||| ||||| Sbjct 1551788 TGTCTTACCCGTCAGAGTCTTGACGAAGATTTG 1551820 Score = 86.0 bits (94), Expect = 4e-11 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || |||||||| | ||||| || ||| || | || || || | |||||||| Sbjct 4173954 AGGCGGAGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTT 4173895 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| ||||| |||||||| || || || || | || || || || || ||||| ||| Sbjct 4173894 CCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCC 4173835 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 |||||||| || || ||||||| || || ||||| | | | | || ||| || Sbjct 4173834 TTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCGACTTCCAA-AGT 4173776 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || ||||| ||||| ||||| ||||| Sbjct 4173775 GATGGTTTTTCCAGTGAGTGTCTTGACGAAGATTTG 4173740 Score = 86.0 bits (94), Expect = 4e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 |||||||| || ||||| || || |||||||||||| ||||||| ||| |||||||||| Sbjct 5726622 GATTTTTCGTCGCCAAACATCGCCAAGGAAATGCATGTTGGACATTTGCGATCTACAATC 5726681 Query 817160 ATTGGTGAATCTCTTTGTAG 817179 ||||| || || ||||||| Sbjct 5726682 ATTGGAGATTCCATTTGTAG 5726701 >seq9 Length=17485439 Score = 109 bits (120), Expect = 4e-18 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| || ||| | ||||| |||||| ||||| | |||| ||| | || || Sbjct 504036 GCAGTTGGAATCGATCTCGGAACCACTTACTCCTGTGTCGGAGTTTTTCAACACGGAAAG 504095 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||| || || ||||| || ||||| || ||||| || ||| |||| || Sbjct 504096 GTCGAGATCATTGCTAACGATCAAGGAAACAGAACCACTCCATCGTACGTTGCTTTCACC 504155 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || |||||| ||| || ||||||||||| ||| |||||| Sbjct 504156 GACTCTGAACGTCTCATCGGAGATGCTGCCAAAAATCAAG 504195 >seq272 Length=79173 Score = 102 bits (112), Expect = 5e-16 Identities = 343/524 (65%), Gaps = 35/524 (7%) Strand=Plus/Minus Query 297139 TGGGGAACACCAATTCCAATTTG--GAAATCTGATGATGGTGAAGAAATAATTTGTATTG 297196 |||||||| ||||| ||||||| | ||||| ||||| ||||| | ||||| ||| Sbjct 12792 TGGGGAACTCCAAT--CAATTTGTGGGTGTCTGACGATGGAGAAGAGGTGGTTTGTGTTG 12735 Query 297197 GTTCACTTGAAGAATTAAAAGAATTTTCAGGAATTGATAATATTAATGATTTACATATTG 297256 | ||| ||||| |||| | || ||| | || |||| ||| | || | | Sbjct 12734 GAAGCATTGCCGAATTGGAAGAGCTCTCCGGAC---AAAAGATTACCGATCTTCACAGAG 12678 Query 297257 ATAAAATTGATCAAATAAAAATTCCTTCTCGTAAAGGAAAAGGCATGTTATCTCGTGTTA 297316 | | ||||| | || | || || |||||| ||||| || | | | || Sbjct 12677 AAAGTGTTGATGACATCACCATCCCATCTCGTTCCGGAAAGGGAGTTCTGAAGAGAGTAT 12618 Query 297317 CCGGTGTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATTCATTATC 297376 ||| || || ||||||||||| || || || || ||||| |||| || | |||||||| Sbjct 12617 CCGAAGTGTTCGATTGTTGGTTCGAGTCTGGATCCATGCCATATGCCCAGAATCATTATC 12558 Query 297377 CTTTTGAAAATTCCGAAA----TTTTA-GAC-ACTTCACAAGATTATATTGCAGATTTTA 297430 | || || ||| ||||| ||| | ||| ||||| || || ||||| | Sbjct 12557 CATTCGAGAAT--CGAAAGATCTTTGAGGACAACTTCCCA----------GCCGATTTCA 12510 Query 297431 TAACAGAATCAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAG 297490 | | || ||| |||||||| | || ||||| || ||| | | || || || || | Sbjct 12509 TCGCCGAGGGAATCGATCAAACCCGTGGATGGTTCTACACTCTTCTTGTGCTCTCAACTG 12450 Query 297491 CTATATTTAACAAACCAGCATTTAAAAATGTAAT-TGTTACAGGAATTGTTAACGCAGCT 297549 || | || ||||||||| |||| || ||| | || || || || | ||| ||| || Sbjct 12449 CTCTTTTCAACAAACCACCATTCAAGAATCTCATCTGCAAC-GGTCTCGTTCTCGCTTCT 12391 Query 297550 GATGGACAAAAAATGTCAAAAAGTAAAGGTAATTATCCTGATCCAA---ATATTTTGATG 297606 || ||| || |||||||| || || || ||||| ||||||| | ||| ||| Sbjct 12390 GACGGAGCCAAGATGTCAAAGAGAAAGAAGAACTATCCAGATCCAATGGAGATTGTGA-- 12333 Query 297607 GATAAATATGGTGCAGATACTTTACGTCTTTATTTATTATCAAC 297650 | || || || || || || | ||||| || | |||||||| Sbjct 12332 -ACAAGTACGGAGCCGACGCTCTCCGTCTCTA--TCTTATCAAC 12292 >seq11 Length=19495157 Score = 96.9 bits (106), Expect = 2e-14 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||||||||| || ||||| ||||||||||||||||| || || || || ||| || Sbjct 1838967 TTACTGTTCCAGCCTACTTTAACGATTCTCAACGTCAAGCCACCAAGGACGCCGGACAAA 1839026 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || | || || || ||| | ||| | || || || ||||| || || || |||||||| | Sbjct 1839027 TTTCTGGACTCAACGTTCTTCGTGTGATCAACGAGCCAACTGCCGCTGCTCTTGCTTACG 1839086 Query 474864 G 474864 | Sbjct 1839087 G 1839087 >seq13 Length=21540570 Score = 95.1 bits (104), Expect = 8e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCT 474717 || ||| || | || | |||||| | | ||| ||||| | | ||| ||| || || || Sbjct 11506548 CCAGAAGAAGTCTCCGCTATGGTTCTCGTCAAGATGAAGGAGATCGCCGAG-TCCTACCT 11506490 Query 474718 TGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACG 474777 ||| | ||||| | | || || | || || ||||| || || || ||| | || || Sbjct 11506489 CGGAAAGGAAGTCAAGCACGCCGTCGTCACCGTCCCAGCTTACTTCAACGATGCCCAGCG 11506430 Query 474778 TCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGA 474837 |||||| ||||||||||| |||| || || || | || || | ||||| ||||| || Sbjct 11506429 TCAAGCCACTAAAGATGCCGGAACCATCGCTGGATTGAACGTCGTTCGTATCATTAACGA 11506370 Query 474838 ACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| || ||||| | || || || ||||| ||||| Sbjct 11506369 GCCAACCGCCGCCGCCATCGCCTACGGACTTGACAAGAA 11506331 >seq1 Length=15455979 Score = 93.3 bits (102), Expect = 3e-13 Identities = 266/400 (67%), Gaps = 12/400 (3%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGG--TC 475850 || || || ||||| ||||| | || ||||| || ||||| || | | || || || Sbjct 1831049 AACCCAGACGAAGCAGTTGCCTTCGGCGCTGCCGTTCAAGCTGCAGTCCTTTCCGGCGTC 1830990 Query 475851 AATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCA--TTAGG 475908 || ||| || | | || || | | || || ||||| |||| ||| | || || Sbjct 1830989 AA--AGATGACACTATCAAAGATGTCTTGCTCGTCGACGTGGCTCC--TTTAAGCTTGGG 1830934 Query 475909 TCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATG 475968 | || || | ||||||| | ||||| ||||| || || | || || | ||||||| | Sbjct 1830933 AATCGAGACTGCTGGAGGGGTCATGACCAATCTCATCGATCGTAACACCCGTATCCCA-G 1830875 Query 475969 CAAAAAATCAAAAGT-ATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAA 476027 |||| | ||| ||| | || ||| | || || || || || | ||||| Sbjct 1830874 CAAAGGCTTCCAAGACATTCACTACCTATGCCGACAACCAGCCAGGCGTCTCTATCCAGG 1830815 Query 476028 TCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTG 476087 ||| ||||| || || | || | ||| ||| || ||||||||| || | ||| Sbjct 1830814 TCTACGAAGGAGAGCGAGCTATGACAAGAGACAATCACCGACTTGGAACCTTCGAA-TTG 1830756 Query 476088 AA-GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGAT 476146 | || || || || || || | ||| |||| ||||| || || ||||| || || ||| Sbjct 1830755 ACTGGAATCCCACCAGCGCCACGTGGAATTCCACAAATCGATGTGACTTTCGACATCGAT 1830696 Query 476147 GCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTA 476186 |||||||||||||| ||||| |||| ||||| |||| Sbjct 1830695 GCAAATGGTATTCTCAATGTCTCTGCGGAGGATAAGTCTA 1830656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268163457589316