Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 2e-12 >seq4 Length=16627154 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/237 (68%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || || || ||||| || ||||| |||||||||||||||||||| || Sbjct 9660752 ACTCCAATTGGTCCAACTCCTGGACCACCTCCTCCGTGTGGAATACAGAATGTCTTGTGC 9660811 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA----CCTACCTG 138298 || || | ||| | ||||| ||| || || | ||| || | | || || || Sbjct 9660812 AAGTTCAAATGTGACACATCACTACCGTAATCTCCTGG----GCGACACAATCCGACTTG 9660867 Query 138299 TGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACA 138358 ||||| | ||| || ||||| | ||| || ||||| || | |||||||| | | ||| Sbjct 9660868 AGCATTCATATTGGCTCCATCCAAATAAACTTGACCTCCGTGCTCATGAACCTTGTCACA 9660927 Query 138359 TATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAAT 138415 | | | || || ||| || || || || || || ||||| || | ||| || Sbjct 9660928 AACATCGCGAATTGATGATTCGAAGACTCCGTGGGTAGAAGGATAGGTGACCATGAT 9660984 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 ||||| || ||||||| | | |||||||||| || || || ||||| || || |||||| Sbjct 9664372 CCATGGTACACTGCATACATTGCAGACATATTGGCCAGAAGAGCTTGGGCGGTACAGATG 9664431 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGC 139381 ||||| || |||||||| | | ||||| || || | |||||| || || Sbjct 9664432 TTACTAGTGGCTTTGTCACGACGGATATGTTGTTCACGAGTTTGGAGAGC 9664481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578995743844840