Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5 109 7e-19 seq4 96.9 4e-15 seq1 87.8 2e-12 >seq5 Length=14578851 Score = 109 bits (120), Expect = 7e-19 Identities = 293/442 (66%), Gaps = 12/442 (3%) Strand=Plus/Plus Query 76491 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 76550 |||| |||||||| | ||||| ||||||||||| || |||||||| || ||| | || | Sbjct 9912105 TTCGCAACAGTCTCCTCATGGCTCCAATGCCAACTGCTTCCACCGCTCAGATCCTCGGAA 9912164 Query 76551 ATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTG 76610 | || |||| |||| |||||||| | ||||||||| | | ||| | |||| Sbjct 9912165 ACAACGAATCGATTGAGCCATACACCTCGAACATCTACTCTCGTCGTGTGCTCTCCGGTG 9912224 Query 76611 AGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCA 76670 | || || |||||| ||| | | || || | ||| || | ||| || Sbjct 9912225 ACTTCCAAATCGTCAACCCACACATGCTGAAGGATTTGGTCGAGAGAGGATTGTGGACCG 9912284 Query 76671 AGGATATGAAGGA---TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATA 76727 | || |||||| | ||||| | || ||| || ||||| || ||| ||| | Sbjct 9912285 ATGAGATGAAGAACCGCCTCATTGCCAA---CAATGGATCGATTCAGAACATCCCAGGAA 9912341 Query 76728 TCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCA 76787 | ||||| ||||||||| | || |||| ||| || ||||| ||| ||| || | | Sbjct 9912342 TTCCAGACGATATCAAGGAGCTTTACCTCACCGTCTGGGAGATCTCACAGAAGGAGATTA 9912401 Query 76788 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATT 76845 | || ||||| || |||||||| ||||| |||||| || ||| | || | Sbjct 9912402 TCGAGATGGCTGCCGATCGTGGAGCATTCATCGATCAA--TCCCAGTCACTCAACATTCA 9912459 Query 76846 CATGG-AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGG 76904 ||||| ||| | | | | | || || | || ||||| | |||| ||||| ||| Sbjct 9912460 CATGGCCAAGCCAAGCTACG-CCGCCATCACATCAATGCACTTCTACGGATGGAAGAAGG 9912518 Query 76905 GGCTCAAAACCGGAATGTACTA 76926 | ||||| || ||||||||||| Sbjct 9912519 GACTCAAGACTGGAATGTACTA 9912540 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 65284 ATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAAT 65343 ||| | | ||| || || | |||||| | | |||| || || || ||||| | | Sbjct 11384206 ATCATCAGAGACGCTGTCGCCATTGAGCAGGAGTTCCTCACCGAAGCCCTCCCCGTTGAC 11384147 Query 65344 CTCATCGGTATGAACT-CTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCT 65402 | ||||| ||||||| | || ||||||| ||||||| |||| || | |||| ||| Sbjct 11384146 ATGATCGGAATGAACTGCCGACT-GATGTCCCAGTACATCGAGTTCGTCGCCGATCATCT 11384088 Query 65403 CCTCAAACAAGTTGGGGTGCCACCCATT-TGGAACGCGAAGAATCCATTTGACTTTATGG 65461 ||| | | | | || ||| | | | |||| ||||||||||||||||| |||| Sbjct 11384087 GCTCCAGGA-GCTCGGATGCGATAAGCTGTACAACGTCAAGAATCCATTTGACTTCATGG 11384029 Query 65462 AAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTT 65508 | ||||| | ||||| |||||||||||||| |||||||| ||| Sbjct 11384028 AGAACATCTCGATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGTT 11383982 >seq4 Length=16627154 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTACT 13612 |||||||| ||| | || ||||| ||| | || || || | | || | ||||||| Sbjct 8907140 GGTATTCCAAAGCTCGAGGACGCCAACGACGCTGGAACAAAAAATTCGCAACAGTGTACG 8907081 Query 13613 CTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTT 13672 ||||| | || ||||| ||||| ||||| || | |||||| | || || || |||| Sbjct 8907080 CTCATCCTTACTGAGGGAGATTCTGCTAAGACTTTGGCGGTTTCCGGACTTTCGATCGTC 8907021 Query 13673 GGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA 13710 ||||||||| | ||||| || ||||||||||| || || Sbjct 8907020 GGTCGTGATAAGTACGGAGTCTTCCCACTTCGTGGAAA 8906983 >seq1 Length=15455979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 27861 CTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCCGTG 27920 |||| ||| || ||||| || | ||| || ||||| ||||||||||| | | | | Sbjct 5682345 CTCACAGACGAGCTGTGCAATTCTATCACCCTTCTTCACCTCAAAGTCAGTTTTGCTGAA 5682404 Query 27921 ATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACCAAC 27980 ||||| |||| ||| |||| || || || || ||||| |||||| || ||||| Sbjct 5682405 GTTGAAAAGAAGGACCTTGATCTCTCCACGGTAATCACTATCAACAACACCAGCCCCAAC 5682464 Query 27981 TTGAATACCATGCTTCACAGCGAGACCGGATCGTGGTGCAACACGACCATA 28031 | ||| ||||| | ||||||||||||||||| ||||| | ||||| Sbjct 5682465 ATCAATGAAGTGCTTGGCTGCGAGACCGGATCGTGGAGCAACTCTTCCATA 5682515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566863236960