Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 1e-12 >seq5 Length=14578851 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 ||||||||||||| ||||| |||||||| ||||| |||||||| || || || || || Sbjct 4175620 TACCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGG 4175561 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||| ||||| |||| || || | ||| ||||| | ||| ||||| || || || | Sbjct 4175560 CTTTGACATTCTCAATAGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTCA 4175501 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | || || | || || ||||| Sbjct 4175500 AAGTCTTGACGAAGATTTGCAT 4175479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984475370790450