Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 6e-15 >seq5 Length=14578851 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| || || || || || | |||||||||||| ||||| |||||||| ||| Sbjct 4175405 TCTTCCAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTA 4175346 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || || || || || || || | ||| ||||| ||||| ||| Sbjct 4175345 TCCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACTTCGAGAGTGATG 4175286 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| | || || | ||| ||||||||| Sbjct 4175285 GTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4175250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905131847688600