Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 109 2e-18 seq1 105 2e-17 >seq5 Length=14578851 Score = 109 bits (120), Expect = 2e-18 Identities = 144/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| |||| || || ||||| ||||||||||| || | || || ||| Sbjct 5696692 ATTGTCATACGAGATGGAACTGCGTGAGGATTAATGATGATGTCCGGAGTAAGACCTTCA 5696751 Query 251905 GCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCCCTTTTGTCCG 251961 |||||||| |||||||| ||||| | ||| ||| |||| ||||| ||||| |||||| Sbjct 5696752 GCAGTGAAAGGCATATC---TTCCTGGCGATACATGATTCCCATAGTACCCTTCTGTCCG 5696808 Query 251962 TGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTA 252021 |||||||| ||||| || ||||| ||| | || || ||| | |||| || Sbjct 5696809 TGACGAGAGGCAAACTTGTCTCCAATTTGTGGAAGTCGGACTGAACGCATTCGAATTTTC 5696868 Query 252022 CAGAAGTTGTAACCATC 252038 ||| |||| |||||| Sbjct 5696869 ACGAACTTGTTACCATC 5696885 Score = 87.8 bits (96), Expect = 5e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 251405 CGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCC 251464 |||| ||||| || || |||||||||| ||| ||| | |||||| | || | || | Sbjct 5696099 CGATCAGACCGCAGTTGTTACACACATACACGTGGTATGGATCAGAAACTTCGAAGAGAC 5696158 Query 251465 GACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGA 251524 | | ||| ||| || ||||| ||||| |||||| |||||||| || |||| Sbjct 5696159 GTTCTCGAAGGAATTGAGTGGCTCCGTGGGAAATTTGACAATCGCGCTCCATCTCTCCGA 5696218 Query 251525 AACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG 251567 |||||||||| ||||| ||||| || || || ||| ||||| Sbjct 5696219 AACGAAGACCTCCATCACGAGCTCTTCCTTCCATAGGTTGACG 5696261 Score = 84.2 bits (92), Expect = 6e-11 Identities = 210/310 (68%), Gaps = 13/310 (4%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || |||| ||| ||||| ||||||||||| | || |||| | | | || | | Sbjct 4955070 CCGACAGAATCGATTTCATCAATGAAAATGATGCAGGGAGCACGGGCTTTGGCCTTGTCG 4955011 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA---A 289146 || | ||||| ||||| ||||| | ||||| ||| ||| | |||||||| | Sbjct 4955010 AACAGATCTCTGACACGACGAGCTCCTTGTCCAACCAACACTTCATCGAATTCAGATCCA 4954951 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 |||| || || | ||||| || | |||||| || || | || || ||||| | ||| Sbjct 4954950 GCGG-TA--TGGAAGAATGGAACCTGTGCTTCTCCGGCAATCGCTCTTGCCAGCAACGTC 4954894 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || |||||||| ||||| || | | || ||||| || |||| | | ||| || | Sbjct 4954893 TTTCCTGTTCCTGGTGGACCAACAAGCAGGACTCCTTTCGGTAGGCGTCCGCCA--AGTC 4954836 Query 289267 TT--ATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || || ||||| || ||||| ||| | || || || ||||| | ||| |||||| Sbjct 4954835 TTGAGTACTTCTC-TGGATCTTTCAAATAGTCCACGATCTCCTCGACTTCTAGCTTTGCC 4954777 Query 289324 TCATCACATC 289333 ||||| |||| Sbjct 4954776 TCATC-CATC 4954768 >seq1 Length=15455979 Score = 105 bits (116), Expect = 2e-17 Identities = 222/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 289018 CTCCttttttt--ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTT 289075 ||||| | ||| |||||| || || ||||||||||| || | | || ||||| |||| Sbjct 3646230 CTCCTCTCTTTCGACCAACTGCGTCGATTTCGTCAATAAACAGGATGCATGGAGAGTTTT 3646289 Query 289076 GTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTA 289135 ||| || || | || | || | || | | || || | ||||| ||||||| | Sbjct 3646290 TTCTAGCCATGGAGAACATATCACGGACTCTTGCTGGACCTACTCCAACGAACATTTCCA 3646349 Query 289136 CAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCG 289195 |||||| || | || ||| ||||| | ||||| ||||| || || || | | Sbjct 3646350 GAAATTCGGATCCAGAAACTGTGATGAACGGAACATTGGCTTCTCCCGCAGTAGCTTTAG 3646409 Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG 289255 | ||||| || || ||||| ||||||||||| || | | |||| || || | ||||| Sbjct 3646410 CAAGAAGAGTTTTTCCTGTACCAGGTGGTCCGGTCAAAATAGCTCCTTTCGGAATTTTTG 3646469 Query 289256 CCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCAT 289315 | ||| | || |||| | |||| | || ||||| | |||| ||| || || Sbjct 3646470 CTCCAAGATCTTTGTATTGTTGAGGGTTTTTCAAAAAATTGACAAACTCCATAATCTCGA 3646529 Query 289316 ATTTTGCCTCATCACATCCTGCTACATCAG 289345 ||| || || ||||| || || ||||||| Sbjct 3646530 TTTTCGCTTCTTCACAGCCAGCAACATCAG 3646559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810679237679