Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5 125 9e-23 seq9 120 4e-21 seq11 104 3e-16 seq1 100 3e-15 >seq5 Length=14578851 Score = 125 bits (138), Expect = 9e-23 Identities = 215/307 (70%), Gaps = 10/307 (3%) Strand=Plus/Plus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 |||||| |||||| |||||| ||||||||||| || |||| |||||| |||||| Sbjct 11383974 TACTCGGAAACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCATG 11384033 Query 868760 CACGGGAACGGGTTG--GGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGC 868817 | || || || | ||| |||| |||| |||||||||||| | |||||| Sbjct 11384034 AAGTCAAATGGATTCTTGACGT--TGTACAGCTTATCGCATCCGAGCTCCTGGAGCAGAT 11384091 Query 868818 GGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCA 868877 | |||||||| ||||||||||||||| |||| || | | |||||| ||||| | | | Sbjct 11384092 GATCGGCGACGAACTCGATGTACTGGGACATCAGTCGGCAGTTCATTCCGATCATGTCAA 11384151 Query 868878 CCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT--- 868934 | || || | ||| | | ||||| | ||| || |||| || || |||||||| Sbjct 11384152 CGGGGAGGGCTTCGGTGAGGAACTCCTGCTCAATGGCGACAGCGTCTCTGATGATCTCGA 11384211 Query 868935 GCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 868994 || || | | ||| | ||||||| ||||| | |||||| ||||| || |||| Sbjct 11384212 AGATGCGCTC-TTGGCTCA--GCTTGTTTTGAAGCATTGAGTAGAGGAGGCAAGCGAAGT 11384268 Query 868995 CGCAGTG 869001 ||| ||| Sbjct 11384269 CGCGGTG 11384275 >seq9 Length=17485439 Score = 120 bits (132), Expect = 4e-21 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 1254366 ATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGC 1254425 ||||| || ||||| |||||||| ||||| | ||| || |||||||| ||||| Sbjct 7697214 ATCAGACGGACGGCTGTCTGGATTTCGCGAGAAGAGATGGTAGAACGCTTGTTGTAGTGC 7697273 Query 1254426 GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 || ||||| |||||| | ||||||| |||| | ||| |||||||||||||||||| Sbjct 7697274 GCAAGACGAGAGGCCTCAGCAGCGATGCGCTCGAAGACGTCATTGACAAACGAGTTCATG 7697333 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAG 1254545 | ||||| | ||| ||||| || ||| ||||| || |||||||| || |||| Sbjct 7697334 ATAGACATGGCTTTGGAGGAGACTCCAGTGTCTGGGTGAACTTGCTTGAGGACACGGTAG 7697393 Query 1254546 ATGAACGAC-GAGTACGA 1254562 ||| | ||| |||||||| Sbjct 7697394 ATGTA-GACAGAGTACGA 7697410 Score = 116 bits (128), Expect = 5e-20 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1254366 ATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGC 1254425 ||||| || ||||| |||||||| ||||| | ||| || |||||||| |||| Sbjct 7831774 ATCAGACGGACGGCTGTCTGGATTTCGCGAGAAGAGATGGTAGAACGCTTGTTGTAGTGA 7831715 Query 1254426 GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 || ||||| |||||| | ||||||| |||| | ||| |||||||||||||||||| Sbjct 7831714 GCAAGACGAGAGGCCTCAGCAGCGATGCGCTCGAAGACGTCATTGACAAACGAGTTCATG 7831655 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAG 1254545 | ||||| | ||| ||||| || ||| ||||| || |||||||| || |||| Sbjct 7831654 ATAGACATGGCTTTGGAGGAGACTCCAGTGTCTGGGTGAACTTGCTTGAGGACACGGTAG 7831595 Query 1254546 ATGAACGAC-GAGTACGA 1254562 ||| | ||| |||||||| Sbjct 7831594 ATGTA-GACAGAGTACGA 7831578 Score = 116 bits (128), Expect = 5e-20 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1254366 ATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGC 1254425 ||||| || ||||| |||||||| ||||| | ||| || |||||||| |||| Sbjct 7837129 ATCAGACGGACGGCTGTCTGGATTTCGCGAGAAGAGATGGTAGAACGCTTGTTGTAGTGA 7837070 Query 1254426 GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 || ||||| |||||| | ||||||| |||| | ||| |||||||||||||||||| Sbjct 7837069 GCAAGACGAGAGGCCTCAGCAGCGATGCGCTCGAAGACGTCATTGACAAACGAGTTCATG 7837010 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAG 1254545 | ||||| | ||| ||||| || ||| ||||| || |||||||| || |||| Sbjct 7837009 ATAGACATGGCTTTGGAGGAGACTCCAGTGTCTGGGTGAACTTGCTTGAGGACACGGTAG 7836950 Query 1254546 ATGAACGAC-GAGTACGA 1254562 ||| | ||| |||||||| Sbjct 7836949 ATGTA-GACAGAGTACGA 7836933 Score = 111 bits (122), Expect = 2e-18 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 1254366 ATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGC 1254425 ||||| || ||||| |||||||| ||||| | ||| || |||||||| |||| Sbjct 8460330 ATCAGACGGACGGCTGTCTGGATTTCGCGAGAAGAGATGGTAGAACGCTTGTTGTAGTGA 8460389 Query 1254426 GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 || ||||| |||||| | ||||||| |||| | ||| |||||||||||||||||| Sbjct 8460390 GCAAGACGAGAGGCCTCAGCAGCGATGCGCTCGAAGACGTCATTGACAAACGAGTTCATG 8460449 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAG 1254545 | ||||| | ||| ||||| || ||| ||||| || |||||||| || |||| Sbjct 8460450 ATAGACATGGCTTTGGAGGAGACTCCAGTGTCTGGGTGAACTTGCTTGAGGACGCGGTAG 8460509 Query 1254546 ATGAACGAC-GAGTACGA 1254562 ||| | ||| ||||| || Sbjct 8460510 ATGTA-GACAGAGTAGGA 8460526 Score = 86.0 bits (94), Expect = 8e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || |||||| | ||||| ||||| | | ||||| || | Sbjct 2387954 AGAAGCGCACTGATGACATCGCCAGCTGGGATGCCGAGTTCCTCAAGGTCGACCAAGGAA 2387895 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || | ||| | ||| | || ||||||||| | || ||||| || |||||| | Sbjct 2387894 CTCTTTCCGAGATCATCTTGGCGGCCAACTACATGGATATCAAAGGACTTCTCGATGTCA 2387835 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| |||| || |||||||||||||| ||||| || || || || ||| || | Sbjct 2387834 CCTGCAAAGCTGTTGCTAACATGATCAAGGGAAAGTCTCCAGACGAAATTCGCCGCACAT 2387775 Query 1592286 TTAACATCAAGTACG 1592300 | ||||||||| ||| Sbjct 2387774 TGAACATCAAGAACG 2387760 >seq11 Length=19495157 Score = 104 bits (114), Expect = 3e-16 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1254413 CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1254472 |||||| |||| || ||||| ||||||| | ||||||| |||| | ||||||||| Sbjct 1239402 CTTGTTGTAGTGAGCAAGACGAGATGCCTCGGCGGCGATGCGCTCGAAGACGTCGTTGAC 1239461 Query 1254473 AAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1254532 ||||||||||||| |||||| | |||| |||| || ||| || || |||||||| Sbjct 1239462 GAACGAGTTCATGATCGACATGGCCTTGGAAGAGACTCCGGTGTCTGGATGGACCTGCTT 1239521 Query 1254533 GAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||| ||||||| || ||||| || Sbjct 1239522 GAGCACACGGTAGATGTACACAGAGTAGGA 1239551 Score = 100 bits (110), Expect = 3e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 1254413 CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1254472 |||||| |||| || ||||| ||||||| | ||||||| |||| | ||||||||| Sbjct 1251627 CTTGTTGTAGTGAGCAAGACGAGATGCCTCGGCGGCGATGCGCTCGAAGACGTCGTTGAC 1251568 Query 1254473 AAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1254532 ||||||||||||| |||||| | |||| |||| || ||| || || |||||||| Sbjct 1251567 GAACGAGTTCATGATCGACATGGCCTTGGAAGAGACTCCAGTGTCTGGATGGACCTGCTT 1251508 Query 1254533 GAGCACCTTGTAGAT 1254547 |||||| |||||| Sbjct 1251507 GAGCACACGGTAGAT 1251493 Score = 100 bits (110), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||||| || || ||||| || || ||||| | || Sbjct 8693086 GCTTGGCGAGCTCTCCTGGAAGGATCAAACGAACAGCGGTTTGAATTTCGCGGGATGAGA 8693145 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| || ||||| ||||||| | ||||||| |||| | Sbjct 8693146 TGGTCGATCTCTTGTTGTAGTGAGCAAGACGAGAAGCCTCGGCGGCGATGCGCTCGAAGA 8693205 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 || ||||| || |||||||||| |||||| | |||| |||| || ||| || | Sbjct 8693206 CATCATTGACGAAAGAGTTCATGATCGACATGGCCTTGGAAGAGACTCCAGTGTCTGGAT 8693265 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | |||||||||||||| ||||||| || ||||| || Sbjct 8693266 GGACCTGCTTGAGCACACGGTAGATGTACACAGAGTAGGA 8693305 Score = 95.1 bits (104), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||||| || || ||||| || || ||||| | || Sbjct 8689697 GCTTGGCGAGCTCTCCTGGAAGGATCAAACGAACAGCGGTTTGAATTTCGCGGGATGAGA 8689638 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| || ||||| ||||||| | ||||||| |||| | Sbjct 8689637 TGGTCGATCTCTTGTTGTAGTGAGCAAGACGAGAAGCCTCGGCGGCGATGCGCTCGAAGA 8689578 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 || ||||| || |||||||||| ||||| | |||| |||| || ||| || | Sbjct 8689577 CATCATTGACGAAAGAGTTCATGATTGACATGGCCTTGGAAGAGACACCAGTGTCTGGAT 8689518 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | |||||||||||||| ||||||| || ||||| || Sbjct 8689517 GGACCTGCTTGAGCACACGGTAGATGTACACAGAGTAGGA 8689478 Score = 95.1 bits (104), Expect = 1e-13 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||| || || |||||||||||||| || || | || Sbjct 13547439 GCTTGGCAAGCTCTCCTGGAAGGATGAGACGGACGGCGGTCTGGATTTCACGAGATGAGA 13547380 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| |||| || ||||| || |||| | ||||||| |||| | Sbjct 13547379 TGGTGGAGCGTTTGTTGTAGTGGGCGAGACGAGAAGCTTCGGAGGCGATGCGCTCGAAGA 13547320 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | ||| ||||| || || |||| Sbjct 13547319 CGTCGTTGACGAAGGAGTTCATGATGGACATGGCCTTCGAGGAGACTCCAGTATCTGGGT 13547260 Query 1254523 GCACCTG 1254529 | ||||| Sbjct 13547259 GAACCTG 13547253 Score = 86.0 bits (94), Expect = 8e-11 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||||| || || ||||| || || ||||| | || Sbjct 8697459 GCTTGGCGAGCTCTCCTGGAAGGATCAAACGAACAGCGGTTTGAATTTCGCGGGATGAGA 8697518 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| || ||||| || |||| | ||||||| || | | Sbjct 8697519 TGGTCGATCTCTTGTTGTAGTGAGCAAGACGAGAAGCTTCGGCGGCGATGCGCTCAAAGA 8697578 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 || ||||| || |||||||||| ||||| | |||| |||| || ||| || | Sbjct 8697579 CATCATTGACGAAAGAGTTCATGATTGACATGGCCTTGGAAGAGACACCAGTGTCTGGAT 8697638 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | |||||||||||||| ||||||| || ||||| || Sbjct 8697639 GGACCTGCTTGAGCACACGGTAGATGTACACAGAGTAGGA 8697678 >seq1 Length=15455979 Score = 100 bits (110), Expect = 3e-15 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||||| || ||||| || ||||| ||||| | ||| || ||| ||||| |||| Sbjct 5548327 GATCAAACGGACGGCCGTTTGGATTTCGCGGGAAGAGATGGTTGAGCGTTTGTTGTAGTG 5548386 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 || ||||| ||||| | |||| || |||| | ||||||||| || |||||||| Sbjct 5548387 GGCAAGACGAGAAGCCTCAGCAGCGATACGTTCGAAGACGTCGTTGACGAAGGAGTTCAT 5548446 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || ||||| | ||| ||||| || ||| ||||| ||||||||||| || ||| Sbjct 5548447 GATGGACATAGCCTTCGAGGAGACTCCAGTGTCTGGGTGAACCTGCTTGAGGACACGGTA 5548506 Query 1254545 GATGAACGAC-GAGTACGA 1254562 |||| | ||| |||||||| Sbjct 5548507 GATGTA-GACAGAGTACGA 5548524 Score = 89.7 bits (98), Expect = 6e-12 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || || | | ||||| || ||||| || ||||| ||||| | || Sbjct 6557555 GCTTGGCCAACTCTCCTGGAAGGATCAAACGGACGGCCGTTTGGATTTCGCGGGAAGAGA 6557496 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || ||||| || || | ||||||| |||| | Sbjct 6557495 TGGTCGAACGCTTGTTGTAGTGGGCAAGACGAGAAGCTTCAGCAGCGATGCGTTCGAAGA 6557436 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| ||||| || |||||||||| ||||| | ||| ||| | || || |||| Sbjct 6557435 CGTCATTGACGAAGGAGTTCATGATGGACATGGCCTTCGAGGATACTCCGGTATCTGGGT 6557376 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTACGA 1254562 | ||||||||||| || ||||||| | ||| |||||||| Sbjct 6557375 GAACCTGCTTGAGGACACGGTAGATGTA-GACAGAGTACGA 6557336 Score = 87.8 bits (96), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || |||||| | |||||| ||||| | | ||||| || | Sbjct 5773736 AGAAGCGCACTGATGACATCGCCAGGTGGGATGTCGAGTTCCTCAAAGTCGACCAAGGAA 5773677 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || ||| | ||| | || || |||||| | || |||||| || |||||| | Sbjct 5773676 CTCTTTTCGAGCTCATCTTGGCTGCTAACTACTTGGATATCAAGGGACTTCTCGATGTCA 5773617 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| |||| || |||||||||||||| ||||| || || || || || || | Sbjct 5773616 CCTGCAAAACTGTTGCTAACATGATCAAGGGAAAGTCTCCAGAAGAAATTCGTCGCACAT 5773557 Query 1592286 TTAACATCAAG 1592296 | ||||||||| Sbjct 5773556 TCAACATCAAG 5773546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107109082261339