Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5 140 3e-28 >seq5 Length=14578851 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || ||||| || ||||| || ||||| | Sbjct 4175023 ATGCAGATCTTCGTCAAGACGCTTACCGGAAAGACTATCACCCTCGAGGTCGAAGCTTCG 4175082 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 4175083 GACACTATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 4175142 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || || ||||| |||||| | | | | || || || ||| Sbjct 4175143 CAACGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAAC 4175202 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || ||||||||| Sbjct 4175203 ATCCAGAAGGAGTCCACTCTCCACTTGGTG 4175232 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || |||||||| ||||| | Sbjct 4175251 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAAGTCGAAGCTTCT 4175310 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || || |||||||| || || || ||| Sbjct 4175311 GACACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAA 4175370 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || || |||| ||| |||| | |||| ||||| ||| Sbjct 4175371 CAGAGACTCATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACCCTGTCGGATTACAAC 4175430 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || |||||||| || ||||| || |||| Sbjct 4175431 ATCCAAAAGGAGTCAACACTCCATCTTG 4175458 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| || ||| | |||||||| || ||| || Sbjct 1551823 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTCCCCTCGAAGTCGAGGCCTCC 1551764 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| |||||||| || || || || Sbjct 1551763 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 1551704 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| || || || |||||| | | | || || || ||| Sbjct 1551703 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 1551644 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || |||||||| | || | || ||||| Sbjct 1551643 ATCCAGAAGGAGTCCACTCTCCACTTGGTTCTCCGTCTTCGTGGAGG 1551597 Score = 113 bits (124), Expect = 4e-20 Identities = 304/460 (66%), Gaps = 4/460 (1%) Strand=Plus/Minus Query 138154 TTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCC 138213 ||||| || ||||| | | ||| | | ||||| || || | || || |||||||| Sbjct 9912588 TTATCCACGGTAAATTGAACGGCGTTGACAGCTGGCTTGGTACGCAAGTAGTACATTCCA 9912529 Query 138214 GTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGT 138273 || || | || || | ||| |||| | ||| || || |||| ||||| | || Sbjct 9912528 GTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCGGCGTAGCTTGGC 9912469 Query 138274 TTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCC 138333 || |||| ||||| | || || ||||||||||| || || ||||| ||| Sbjct 9912468 TTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCACGATCGGCAGCC 9912409 Query 138334 ATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT-G 138392 || | || | | || | |||||||| ||||| ||| || || |||| | Sbjct 9912408 ATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGCTCCTTGATATCG 9912349 Query 138393 TCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCAT 138452 || || ||| || || || ||||| || ||| ||||||| ||| || |||| Sbjct 9912348 TCT-GGAATTCCTGGGATGTTCTGAATCGATCCATTGTTGGCAATGAGGCGGTTCTTCAT 9912290 Query 138453 GTCATCGTTGTACAGATTCAA-CTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCT 138511 |||||| | ||| || | || || ||| || || | || | | ||| | || | Sbjct 9912289 CTCATCGGTCCACA-ATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGACGATTT 9912231 Query 138512 GAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATT 138571 | || ||||||| | || |||||| ||| ||||| |||| | ||||||| ||||| Sbjct 9912230 GGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAATCGATT 9912171 Query 138572 CGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCAT 138611 |||||||||| || |||||||| |||| || || ||||| Sbjct 9912170 CGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCAT 9912131 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || ||||| || || |||||||| |||||| || Sbjct 4173965 ATGCAGATCTTCGTCAAGACACTCACTGGAAAAACCATCACACTCGAAGTCGAAGCCTCC 4174024 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||||||||| |||||||| || || ||||| Sbjct 4174025 GACACCATTGAGAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAG 4174084 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||| | |||||||||||||| || Sbjct 4174085 CAAAGATTGATCTTTGCCGGTAA 4174107 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || ||||| || || | ||||| || || || Sbjct 4173737 ATGCAAATCTTCGTCAAGACACTCACTGGAAAAACCATCACTTTGGAAGTCGAGGCTTCC 4173796 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || ||||||||||| || ||||| || || || || Sbjct 4173797 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 4173856 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || ||||| |||||| |||| | || || || ||| Sbjct 4173857 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAAC 4173916 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||||||||| || |||||||| Sbjct 4173917 ATCCAGAAGGAATCGACTCTTCACTTGGT 4173945 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | ||||| || || || || | ||||| ||||| | Sbjct 4175754 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4175813 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| ||||| |||||||| || || || || Sbjct 4175814 GACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAG 4175873 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTAT 24880 || || ||||||||||| || || ||||| ||||| || || || |||| || || Sbjct 4175874 CAGCGCTTGATCTTTGCTGGAAAGCAGCTCGAGGA--CG-GACGCACTTTGTCCGACTAC 4175930 Query 24881 AACATTCAAAAGGAATCGACACTACA 24906 ||||| |||||||| ||||| || || Sbjct 4175931 AACATCCAAAAGGAGTCGACCCTTCA 4175956 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | |||||| | || || |||||||| || | || || || || || Sbjct 4173509 ATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCTTGGAGGTGGAGGCTTCC 4173568 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || ||||||||||| || ||||| || || || || Sbjct 4173569 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 4173628 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || ||||| |||||| |||| | || || || ||| Sbjct 4173629 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAAC 4173688 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || ||||||||| Sbjct 4173689 ATCCAGAAGGAGTCCACTCTCCACTTGGTG 4173718 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || |||||||| ||||| | Sbjct 4174795 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTCG 4174854 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| |||||||| || ||||| || || || || Sbjct 4174855 GACACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAG 4174914 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || || || |||||| | | | || ||||| ||| Sbjct 4174915 CAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAAC 4174974 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 4174975 ATCCAAAAGGAGTCTACTCTCCA 4174997 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | ||||| || || || || | ||||| ||||| | Sbjct 4175479 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4175538 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| |||||||| || || |||||| Sbjct 4175539 GACACTATTGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAA 4175598 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | ||||||||||| || Sbjct 4175599 CAAAGATTGATCTTTGCTGG 4175618 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || |||||||| ||||| | Sbjct 4174521 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTCG 4174580 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| |||||||| || || || || Sbjct 4174581 GACACTATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAG 4174640 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || ||||| || || || || Sbjct 4174641 CAGCGATTGATTTTCGCTGGTAA 4174663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895536094760