Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9 154 2e-31 seq11 136 6e-26 seq1 127 3e-23 seq5 113 7e-19 >seq9 Length=17485439 Score = 154 bits (170), Expect = 2e-31 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || |||||||| |||| || || || | | Sbjct 7697152 TGTACTTGGTGACGGCCTTGGTTCCTTCAGACACGGCGTGTTTGGCAAGCTCTCCTGGAA 7697211 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| |||||||| ||||| | ||| || |||||||| | Sbjct 7697212 GAATCAGACGGACGGCTGTCTGGATTTCGCGAGAAGAGATGGTAGAACGCTTGTTGTAGT 7697271 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || |||||| | ||||||| |||| | ||| |||||||||||||||| Sbjct 7697272 GCGCAAGACGAGAGGCCTCAGCAGCGATGCGCTCGAAGACGTCATTGACAAACGAGTTCA 7697331 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | |||| ||||| || ||| ||||| || |||||||| || Sbjct 7697332 TGATAGACATGGCTTTGGAGGAGACTCCAGTGTCTGGGTGAACTTGCTTGAGGAC 7697386 Score = 149 bits (164), Expect = 1e-29 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || |||||||| |||| || || || | | Sbjct 7831836 TGTACTTGGTGACGGCCTTGGTTCCTTCAGACACGGCGTGTTTGGCAAGCTCTCCTGGAA 7831777 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| |||||||| ||||| | ||| || |||||||| | Sbjct 7831776 GAATCAGACGGACGGCTGTCTGGATTTCGCGAGAAGAGATGGTAGAACGCTTGTTGTAGT 7831717 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || |||||| | ||||||| |||| | ||| |||||||||||||||| Sbjct 7831716 GAGCAAGACGAGAGGCCTCAGCAGCGATGCGCTCGAAGACGTCATTGACAAACGAGTTCA 7831657 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | |||| ||||| || ||| ||||| || |||||||| || Sbjct 7831656 TGATAGACATGGCTTTGGAGGAGACTCCAGTGTCTGGGTGAACTTGCTTGAGGAC 7831602 Score = 149 bits (164), Expect = 1e-29 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || |||||||| |||| || || || | | Sbjct 7837191 TGTACTTGGTGACGGCCTTGGTTCCTTCAGACACGGCGTGTTTGGCAAGCTCTCCTGGAA 7837132 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| |||||||| ||||| | ||| || |||||||| | Sbjct 7837131 GAATCAGACGGACGGCTGTCTGGATTTCGCGAGAAGAGATGGTAGAACGCTTGTTGTAGT 7837072 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || |||||| | ||||||| |||| | ||| |||||||||||||||| Sbjct 7837071 GAGCAAGACGAGAGGCCTCAGCAGCGATGCGCTCGAAGACGTCATTGACAAACGAGTTCA 7837012 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | |||| ||||| || ||| ||||| || |||||||| || Sbjct 7837011 TGATAGACATGGCTTTGGAGGAGACTCCAGTGTCTGGGTGAACTTGCTTGAGGAC 7836957 Score = 149 bits (164), Expect = 1e-29 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || |||||||| |||| || || || | | Sbjct 8460268 TGTACTTGGTGACGGCCTTGGTTCCTTCAGACACGGCGTGTTTGGCAAGCTCTCCTGGAA 8460327 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| |||||||| ||||| | ||| || |||||||| | Sbjct 8460328 GAATCAGACGGACGGCTGTCTGGATTTCGCGAGAAGAGATGGTAGAACGCTTGTTGTAGT 8460387 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || |||||| | ||||||| |||| | ||| |||||||||||||||| Sbjct 8460388 GAGCAAGACGAGAGGCCTCAGCAGCGATGCGCTCGAAGACGTCATTGACAAACGAGTTCA 8460447 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | |||| ||||| || ||| ||||| || |||||||| || Sbjct 8460448 TGATAGACATGGCTTTGGAGGAGACTCCAGTGTCTGGGTGAACTTGCTTGAGGAC 8460502 >seq11 Length=19495157 Score = 136 bits (150), Expect = 6e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || ||||||||| |||| || || || | | Sbjct 1239293 TGTACTTGGTAACAGCCTTGGTTCCCTCAGACACGGCGTGCTTGGCGAGCTCTCCTGGAA 1239352 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| || || || || |||| || || | |||||| | Sbjct 1239353 GGATCAAACGGACGGCCGTTTGAATTTCACGGGATGAAATGGTCGATCTCTTGTTGTAGT 1239412 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || ||||||| | ||||||| |||| | ||||||||| |||||||||| Sbjct 1239413 GAGCAAGACGAGATGCCTCGGCGGCGATGCGCTCGAAGACGTCGTTGACGAACGAGTTCA 1239472 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | ||| |||| || ||| || || |||||||||||||| Sbjct 1239473 TGATCGACATGGCCTTGGAAGAGACTCCGGTGTCTGGATGGACCTGCTTGAGCAC 1239527 Score = 136 bits (150), Expect = 6e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || ||||||||| |||| || || || | | Sbjct 1251736 TGTACTTGGTAACAGCCTTGGTTCCCTCAGACACGGCGTGCTTGGCGAGCTCTCCTGGAA 1251677 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| || || || || |||| || || | |||||| | Sbjct 1251676 GGATCAAACGGACGGCCGTTTGAATTTCACGGGATGAAATGGTCGATCTCTTGTTGTAGT 1251617 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || ||||||| | ||||||| |||| | ||||||||| |||||||||| Sbjct 1251616 GAGCAAGACGAGATGCCTCGGCGGCGATGCGCTCGAAGACGTCGTTGACGAACGAGTTCA 1251557 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | ||| |||| || ||| || || |||||||||||||| Sbjct 1251556 TGATCGACATGGCCTTGGAAGAGACTCCAGTGTCTGGATGGACCTGCTTGAGCAC 1251502 Score = 131 bits (144), Expect = 3e-24 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || ||||||||| |||| || || || | | Sbjct 8693047 TGTACTTGGTAACAGCCTTGGTTCCCTCAGACACGGCGTGCTTGGCGAGCTCTCCTGGAA 8693106 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || ||||| || || ||||||| ||| || | |||||| | Sbjct 8693107 GGATCAAACGAACAGCGGTTTGAATTTCGCGGGATGAGATGGTCGATCTCTTGTTGTAGT 8693166 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || ||||||| | ||||||| |||| | || ||||| || ||||||| Sbjct 8693167 GAGCAAGACGAGAAGCCTCGGCGGCGATGCGCTCGAAGACATCATTGACGAAAGAGTTCA 8693226 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | ||| |||| || ||| || || |||||||||||||| Sbjct 8693227 TGATCGACATGGCCTTGGAAGAGACTCCAGTGTCTGGATGGACCTGCTTGAGCAC 8693281 Score = 131 bits (144), Expect = 3e-24 Identities = 167/228 (73%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || || |||||||||||| |||| || || || | | Sbjct 13547478 TGTACTTGGTCACAGCCTTGGTTCCTTCGGAGACGGCGTGCTTGGCAAGCTCTCCTGGAA 13547419 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||| || || |||||||||||||| || || | ||| ||| ||| ||||| ||| Sbjct 13547418 GGATGAGACGGACGGCGGTCTGGATTTCACGAGATGAGATGGTGGAGCGTTTGTTGTAGT 13547359 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || || |||| | ||||||| |||| | ||||||||| || ||||| Sbjct 13547358 GGGCG--AGACGAGAAGCTTCGGAGGCGATGCGCTCGAAGACGTCGTTGACGAAGGAGTT 13547301 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 |||||| ||||| | || ||||| || || ||||| ||||| Sbjct 13547300 CATGATGGACATGGCCTTCGAGGAGACTCCAGTATCTGGGTGAACCTG 13547253 Score = 127 bits (140), Expect = 3e-23 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || ||||||||| |||| || || || | | Sbjct 8689736 TGTACTTGGTAACAGCCTTGGTTCCCTCAGACACGGCGTGCTTGGCGAGCTCTCCTGGAA 8689677 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || ||||| || || ||||||| ||| || | |||||| | Sbjct 8689676 GGATCAAACGAACAGCGGTTTGAATTTCGCGGGATGAGATGGTCGATCTCTTGTTGTAGT 8689617 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || ||||||| | ||||||| |||| | || ||||| || ||||||| Sbjct 8689616 GAGCAAGACGAGAAGCCTCGGCGGCGATGCGCTCGAAGACATCATTGACGAAAGAGTTCA 8689557 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | ||| |||| || ||| || || |||||||||||||| Sbjct 8689556 TGATTGACATGGCCTTGGAAGAGACACCAGTGTCTGGATGGACCTGCTTGAGCAC 8689502 Score = 118 bits (130), Expect = 2e-20 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || ||||||||| |||| || || || | | Sbjct 8697420 TGTACTTGGTAACAGCCTTGGTTCCCTCAGACACGGCGTGCTTGGCGAGCTCTCCTGGAA 8697479 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || ||||| || || ||||||| ||| || | |||||| | Sbjct 8697480 GGATCAAACGAACAGCGGTTTGAATTTCGCGGGATGAGATGGTCGATCTCTTGTTGTAGT 8697539 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || |||| | ||||||| || | | || ||||| || ||||||| Sbjct 8697540 GAGCAAGACGAGAAGCTTCGGCGGCGATGCGCTCAAAGACATCATTGACGAAAGAGTTCA 8697599 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | ||| |||| || ||| || || |||||||||||||| Sbjct 8697600 TGATTGACATGGCCTTGGAAGAGACACCAGTGTCTGGATGGACCTGCTTGAGCAC 8697654 >seq1 Length=15455979 Score = 127 bits (140), Expect = 3e-23 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || ||||||||| | |||| || || | | Sbjct 5548266 TGTACTTGGTCACAGCCTTGGTTCCCTCAGAAACGGCGTGCTTTGCCAACTCTCCTGGAA 5548325 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| || ||||| ||||||| ||| || ||| ||||| | Sbjct 5548326 GGATCAAACGGACGGCCGTTTGGATTTCGCGGGAAGAGATGGTTGAGCGTTTGTTGTAGT 5548385 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || ||||| | |||| || |||| | ||||||||| || ||||||| Sbjct 5548386 GGGCAAGACGAGAAGCCTCAGCAGCGATACGTTCGAAGACGTCGTTGACGAAGGAGTTCA 5548445 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | || ||||| || ||| ||||| ||||||||||| || Sbjct 5548446 TGATGGACATAGCCTTCGAGGAGACTCCAGTGTCTGGGTGAACCTGCTTGAGGAC 5548500 Score = 118 bits (130), Expect = 2e-20 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || ||||||||| |||||| || || | | Sbjct 6557594 TGTACTTGGTCACAGCCTTGGTTCCCTCAGAAACGGCGTGCTTGGCCAACTCTCCTGGAA 6557535 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| || ||||| ||||||| ||| || |||||||| | Sbjct 6557534 GGATCAAACGGACGGCCGTTTGGATTTCGCGGGAAGAGATGGTCGAACGCTTGTTGTAGT 6557475 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || || | ||||||| |||| | ||| ||||| || ||||||| Sbjct 6557474 GGGCAAGACGAGAAGCTTCAGCAGCGATGCGTTCGAAGACGTCATTGACGAAGGAGTTCA 6557415 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | || ||| | || || ||||| ||||||||||| || Sbjct 6557414 TGATGGACATGGCCTTCGAGGATACTCCGGTATCTGGGTGAACCTGCTTGAGGAC 6557360 >seq5 Length=14578851 Score = 113 bits (124), Expect = 7e-19 Identities = 171/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 793907 ATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 793966 ||||||| |||||| |||||| ||||||||||| || |||| |||||| |||||| Sbjct 11383973 ATACTCGGAAACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCAT 11384032 Query 793967 CCACGGGAACGGGTTG--GCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGG 794024 | || || || | ||| ||| |||| ||||| |||||| | ||||| Sbjct 11384033 GAAGTCAAATGGATTCTTGACGTT--GTACAGCTTATCGCATCCGAGCTCCTGGAGCAGA 11384090 Query 794025 CGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGC-GTTCATGCCGATGAGCGC 794083 | ||||||||||| || ||||||||| |||| | | |||| |||||| ||||| | | Sbjct 11384091 TGATCGGCGACGAACTCGATGTACTGGGACATCA-GTCGGCAGTTCATTCCGATCATGTC 11384149 Query 794084 CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||||| || | ||| ||| ||||| | ||| || |||| || || ||||||||| Sbjct 11384150 AACGGGGAGGGCTTCGGTGAGGAACTCCTGCTCAATGGCGACAGCGTCTCTGATGATCT 11384208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916207360536113