Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5 127 1e-24 >seq5 Length=14578851 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 1551612 AGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCC 1551671 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||||||||||| || |||||||||| | || | || |||||||| Sbjct 1551672 TCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCT 1551731 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | || ||||||||| || | || || | Sbjct 1551732 TGGATCTTAGCCTTGAC--ATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTG 1551789 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 |||| ||||| || ||||| || ||||| ||||||| Sbjct 1551790 TCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGA 1551825 Score = 127 bits (140), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| ||||| || |||||||| ||||| ||||||| Sbjct 4173965 TTCCTCCTCTGAGGCGGAGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCG 4173906 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| || || ||||||||||||||||| |||| ||||||||| | | Sbjct 4173905 AAAGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTG 4173846 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | ||||||||||| | ||||| |||||| || || || | || ||||| Sbjct 4173845 GGATTCCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCGATGGTATCGGAAGCCTC 4173788 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || | || ||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 4173787 GACTTCCAAAGTGATGGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 4173737 Score = 127 bits (140), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| ||| | ||| ||||||||| ||||| ||||||| Sbjct 4175251 TTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 4175192 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | || |||| || || |||||||| |||||||||| ||||||||| ||| | | Sbjct 4175191 AGAGGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGTG 4175132 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || || ||||| || || || | || || || Sbjct 4175131 GGATTCCTTCCTTGTCTTGGATCTTAGCCTTGAC--ATTCTCAATAGTGTCCGAAGCTTC 4175074 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || | ||| || |||||||| || || ||||| || ||||||||||| Sbjct 4175073 GACCTCGAGGGTGATAGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4175023 Score = 120 bits (132), Expect = 2e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| ||| | ||| ||||||||| ||||| ||||||| Sbjct 4173737 TTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 4173678 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| || || ||||||||||||||||| |||| ||||||||| | | Sbjct 4173677 AAAGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTG 4173618 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | ||||||||||| | ||||| |||||| || || || | || ||||| Sbjct 4173617 GGATTCCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCGATGGTATCGGAAGCCTC 4173560 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || | ||| || || ||||| || | || || || ||||| |||||||| Sbjct 4173559 CACCTCCAAGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCATGAT 4173506 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| || || || || | || |||| || ||||||||||||||||| Sbjct 4174986 CTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAA 4174927 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| ||||||||| | || | ||||||||||| | || || |||||| | Sbjct 4174926 GATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTGGCTTTGAC--A 4174869 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || || ||||| || | ||| || |||||||| || | ||||| Sbjct 4174868 TTCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAATGTCTTG 4174809 Query 34964 ACAAAGATCTGCAT 34977 || ||||||||||| Sbjct 4174808 ACGAAGATCTGCAT 4174795 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| || ||||| ||| | | |||| |||| ||||||||||||||| Sbjct 4175442 CTCCTTTTGGATGTTGTAATCCGACAGGGTTCTACCATCTTCCAATTGCTTTCCGGCGAA 4175383 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| || |||||| | || | || ||||| || | || || || ||| Sbjct 4175382 GATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTT 4175323 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| || ||||| || | || ||||||||||| || || ||||| || Sbjct 4175322 TTCGATGGTGTCAGAAGCTTCGACTTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGAC 4175263 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 4175262 GAAGATCTGCAT 4175251 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| |||||| || ||||| ||||| || | |||| | || Sbjct 4175965 AGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCC 4175906 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||||| || ||||||||| | || | || |||||||| Sbjct 4175905 TCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCC 4175846 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | || || ||||| || | || |||| Sbjct 4175845 TGGATCTTGGCCTTGAC--ATTCTCGATTGTGTCCGAAGCTTCGACTTCCAAAGTGATGG 4175788 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || | ||||| || ||||| ||||| Sbjct 4175787 TCTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 4175754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691343237173