Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 >seq5 Length=14578851 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || |||||||| || ||||| ||||| || ||| | || ||||||| | Sbjct 4173509 ATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCTTGGAGGTGGAGGCTTCC 4173568 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || ||| || || || || || || | || || ||| Sbjct 4173569 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 4173628 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | || || || ||||| ||||| | | ||| | ||||||||||| Sbjct 4173629 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAAC 4173688 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 4173689 ATCCAGAAGGAGTCCACTCTCCACTTGGTG 4173718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398875015898863