Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 3e-14 >seq5 Length=14578851 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | ||||||||||||||||| || ||||| || || |||||||| | ||| Sbjct 4174107 TTACCGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTA 4174048 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 |||||| | || | ||||| || ||| ||||| || || || ||||| ||||| Sbjct 4174047 GCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGTG 4173988 Query 29764 AAGGTTTTAACAAATATCTGCATT 29787 | || || || || ||||||||| Sbjct 4173987 AGTGTCTTGACGAAGATCTGCATT 4173964 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| || || ||||| || || || ||||| || || | Sbjct 1551597 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1551656 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| |||||||| || || || | |||||||||||||| || || ||| Sbjct 1551657 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 1551716 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || |||||| | || | || || || || ||| Sbjct 1551717 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 1551776 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | || || || || || | || || || || || ||||| Sbjct 1551777 TCGAGGGGAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 1551823 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | ||||||||||| ||||| || || || || || ||||| || | || | Sbjct 4175618 CCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCT 4175559 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 |||||| | || | |||||| ||| ||| ||||| | ||| || || || || || || Sbjct 4175558 TTGACATTCTCAATAGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTCAAA 4175499 Query 29767 GTTTTAACAAATATCTGCAT 29786 || || || || || ||||| Sbjct 4175498 GTCTTGACGAAGATTTGCAT 4175479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217476986747