Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 >seq5 Length=14578851 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| || || || ||||| ||| || ||| |||||||||||| Sbjct 4175957 ATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTG 4175898 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || | ||||||||||| || ||||| ||||||||||| |||||| Sbjct 4175897 CTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTT 4175838 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||| | ||||| | | || || || | |||| ||| || ||||| Sbjct 4175837 GGCCTTGACATTCTCGATTGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGT 4175778 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||| || ||||| || ||||| Sbjct 4175777 CAAAGTCTTGACGAAGATTTGCAT 4175754 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || | | | | ||| ||||| |||||||| | Sbjct 4175219 GTGGACTCCTTCTGGATGTTGTAGTC--CGAGAGGGTACGTCCATCCTCAAGCTGCTTTC 4175162 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || ||||| || || ||||| ||||||||||| |||||| || Sbjct 4175161 CAGCGAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCT 4175102 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | | || || |||| ||||| || || ||||| || | Sbjct 4175101 TGACATTCTCAATAGTGTCCGAAGCTTCGACCTCGAGGGTGATAGTCTTTCCGGTAAGCG 4175042 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 4175041 TCTTGACGAAGATCTGCAT 4175023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | || | | | |||||||| ||||| || Sbjct 1551627 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCA-TCCTCGAGTTGCTTTCC 1551685 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | | |||||||| || || || ||||||||||| |||||| ||| Sbjct 1551686 GGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTT 1551745 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | || |||| || ||| || |||| || | || || || |||||||| Sbjct 1551746 GACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTTACCCGTCAGAGT 1551805 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| || |||||| || Sbjct 1551806 CTTGACGAAGATTTGCATGACT 1551827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| |||| | ||||||||||| || ||||| ||||||||||| |||||| Sbjct 4174664 CTTACCAGCGAAAATCAATCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTT 4174605 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||| | ||| | ||||| | | || || |||| ||||| || || ||||| Sbjct 4174604 GGCTTTGACATTCTCGATAGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGT 4174545 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| |||||||| Sbjct 4174544 CAATGTCTTGACGAAGATCTGCAT 4174521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418582307080