Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9 107 5e-18 >seq9 Length=17485439 Score = 107 bits (118), Expect = 5e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 || ||| |||| || ||| ||||||||||||| | || || || || |||||||| || Sbjct 8011219 CACTTGGATGATAACGATGTGGTTCTGTTCAATCGTCAGCCGTCTCTTCATAAAATCTCC 8011278 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || ||| |||| | ||||||| | | || ||||| |||| || | ||||| Sbjct 8011279 ATCATGAGTCATCGTGCCAAAGTAATGCCAGGGCGAACATTCAGATTCAACGAGTGTGCT 8011338 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| || ||||| || ||||| ||||||||||| ||||| | ||| |||| ||| Sbjct 8011339 TGTACTCCATATAACGCCGATTTCGATGGAGATGAGATGAACTTACATTTACCACAA 8011395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186807219383687