Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 8e-15 >seq5 Length=14578851 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||||| || |||||| ||| || || |||||||| || ||| Sbjct 4175249 CCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 4175190 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | || ||||| || || ||||| || ||||||||| | || Sbjct 4175189 AGGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGTGGG 4175130 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| ||| ||||| | ||| || Sbjct 4175129 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGA-CATTCTCAATAGTGTCCGAAGCTTCGAC 4175071 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||| || || |||||||||||| Sbjct 4175070 CTCGAGGGTGATAGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCATA 4175022 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| ||||| |||||||||||||| || || ||| | || || | ||| Sbjct 4174998 ATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTG 4174939 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 |||||||| || || | | |||||| ||| | || | || || ||||| ||| || Sbjct 4174938 CTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTT 4174879 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | || |||| || | |||||| | ||| || || | |||||||| || || | Sbjct 4174878 -GGCTTTGACATTCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGG 4174820 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || ||||||||||| Sbjct 4174819 TCAATGTCTTGACGAAGATCTGCAT 4174795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702529768640