Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5 138 3e-27 >seq5 Length=14578851 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || ||||| || |||||| | ||||| ||| ||||||| Sbjct 4175254 CAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAAGTCGAAGCTTCTGAC 4175313 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||| || || || |||||||| || ||| || Sbjct 4175314 ACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAACAG 4175373 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||||||||||||||| ||||||||||| || || || | ||||||||| || Sbjct 4175374 AGACTCATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACCCTGTCGGATTACAACATC 4175433 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||||| || || || ||||| Sbjct 4175434 CAAAAGGAGTCAACACTCCATCTTGT 4175459 Score = 131 bits (144), Expect = 4e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||||||| | ||||||||||| ||||| ||||| ||||| ||| || || |||| Sbjct 4173523 CAAAACGTTGACAGGAAAAACTATCACCTTGGAGGTGGAGGCTTCCGATACCATCGAGAA 4173582 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| || ||||| || || ||||| || ||| || ||||| |||| Sbjct 4173583 TGTCAAAGCCAAA-ATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAGAGACTCATCT 4173641 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||||||||||||| | || |||||||| ||| | | || |||||| ||||||| |||| Sbjct 4173642 TCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAACATCCAGAAGGAGT 4173701 Query 206363 CTACTCTTCAC 206373 | ||||| ||| Sbjct 4173702 CCACTCTCCAC 4173712 Score = 131 bits (144), Expect = 4e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| |||||||| |||||||||||||| || ||| || || |||| Sbjct 4173751 CAAGACACTCACTGGAAAAACCATCACTTTGGAAGTCGAGGCTTCCGATACCATCGAGAA 4173810 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| || ||||| || || ||||| || ||| || ||||| |||| Sbjct 4173811 TGTCAAAGCCAAA-ATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAGAGACTCATCT 4173869 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||||||||||||| | || |||||||| ||| | | || |||||| ||||||| || | Sbjct 4173870 TCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAACATCCAGAAGGAAT 4173929 Query 206363 CTACTCTTCAC 206373 | ||||||||| Sbjct 4173930 CGACTCTTCAC 4173940 Score = 129 bits (142), Expect = 1e-24 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| |||||||| | ||||| ||| ||| ||| Sbjct 4174798 CAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTCGGAC 4174857 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||||||||| || || |||||| || ||| || Sbjct 4174858 ACCATCGAGAATGTCAAAGCCAA-GATTCAAGACAAGGAGGGAATTCCACCAGACCAGCA 4174916 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||||| ||||||||||||||||| | || |||||| | ||| | ||||||||||| | Sbjct 4174917 GAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAACAT 4174976 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||| || ||||||||||| || || ||| Sbjct 4174977 CCAAAAGGAGTCTACTCTCCATCTCGTT 4175004 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || |||||||||||||| ||| ||| |||||| |||| || ||| Sbjct 4175778 ACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCGGACACAATCGAGAATGTCAAGGCC 4175837 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || |||||||| || ||| || | | ||||| || |||||| Sbjct 4175838 AAGATCCAGGACAAGGAAGGAATCCCACCAGACCAGCAGCGCTTGATCTTTGCTGGAAAG 4175897 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || ||| | |||||| |||| |||||| |||| || ||||| || ||||| Sbjct 4175898 CAGCTCGAGGACGGACGCACTTTGTCCGACTACAACATCCAAAAGGAGTCGACCCTTCAT 4175957 Query 206374 CTTGTTTTGAGACTTCG 206390 || ||| | | ||||| Sbjct 4175958 CTCGTTCTCCGTCTTCG 4175974 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||||||| || ||| |||||| | ||||||||||||||| Sbjct 1551739 AAGATCCAAGACAAGGAAGGAATTCCACCAGACCAGCAAAGATTGATCTTCGCCGGAAAG 1551680 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | || |||||| | ||| | |||| |||||| ||||||| ||||| ||||| ||| Sbjct 1551679 CAACTCGAGGATGGACGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 1551620 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 1551619 TTGGTTCTCCGTCTTCG 1551603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181815242857007