Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 >seq5 Length=14578851 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 ||||||||||| ||| | ||||| | ||||| || || | ||||| ||||| ||| Sbjct 9910624 TACGTCTCAATGGCGGCGGAAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAGC 9910565 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 || |||||||||| |||| | |||| ||||||||||||||||| || | ||||| Sbjct 9910564 ATTTGCTGTGGTCTTTCGACGACTTCCTTGTTGATCTTGAGAAGGTAGGAACGCTCGAGC 9910505 Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || ||| | || ||||| ||||| ||||| ||||| ||||||| Sbjct 9910504 GTCTTGAATCCGAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACGATGGC 9910455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609013546120