Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11 127 3e-23 seq9 127 3e-23 seq1 113 6e-19 >seq11 Length=19495157 Score = 127 bits (140), Expect = 3e-23 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||||| ||||||||||| || ||||||||| | |||| ||||||| | |||| Sbjct 13547283 AAGGCCATGTCCATCATGAACTCCTTCGTCAACGACGTCTTCGAGCGCATCGCCTCCGAA 13547342 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||| || || | || |||||| ||| ||| ||| | || || ||||||||| Sbjct 13547343 GCTTCTCGTCTCGCCCACTACAACAAACGCTCCACCATCTCATCTCGTGAAATCCAGACC 13547402 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || || ||| | | || || || |||| ||||||||||||||| || |||| Sbjct 13547403 GCCGTCCGTCTCATCCTTCCAGGAGAGCTTGCCAAGCACGCCGTCTCCGAAGGAACCA 13547460 Score = 118 bits (130), Expect = 2e-20 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| |||||||||||||| || || |||| | | | || ||||| | || Sbjct 1239536 ATCTACCGTGTGCTCAAGCAGGTCCATCCAGACACCG--GAGTC-TCTTCCAA---GGCC 1239483 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| ||||||||| | |||| ||||||| | ||||||| | Sbjct 1239482 ATGTCGATCATGAACTCGTTCGTCAACGACGTCTTCGAGCGCATCGCCGCCGAGGCATCT 1239423 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | || || | || || || || || ||||| Sbjct 1239422 CGTCTTGCTCACTACAACAAGAGATCGACCATTTCATCCCGTGAAATTCAAACGGCCGTC 1239363 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| ||||||||| || ||||| |||| Sbjct 1239362 CGTTTGATCCTTCCAGGAGAGCTCGCCAAGCACGCCGTGTCTGAGGGAACCA 1239311 Score = 114 bits (126), Expect = 2e-19 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 724910 TATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTC 724969 ||||||| |||||||||||||| || || || | | | | || ||||| | | Sbjct 1251492 TATCTACCGTGTGCTCAAGCAGGTCCATCCAGACACTG--GAGTC-TCTTCCAA---GGC 1251545 Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 ||||||||||||||||||||| ||||||||| | |||| ||||||| | ||||||| Sbjct 1251546 CATGTCGATCATGAACTCGTTCGTCAACGACGTCTTCGAGCGCATCGCCGCCGAGGCATC 1251605 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||| || || | || ||||||| | || || | || || || || || ||||| Sbjct 1251606 TCGTCTTGCTCACTACAACAAGAGATCGACCATTTCATCCCGTGAAATTCAAACGGCCGT 1251665 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| ||||||||| || ||||| |||| Sbjct 1251666 CCGTTTGATCCTTCCAGGAGAGCTCGCCAAGCACGCCGTGTCTGAGGGAACCA 1251718 Score = 109 bits (120), Expect = 8e-18 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| |||||||||||||| || || || | | | | || ||||| | || Sbjct 8693290 ATCTACCGTGTGCTCAAGCAGGTCCATCCAGACACTG--GAGTC-TCTTCCAA---GGCC 8693237 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||| || ||||| || | |||| ||||||| | ||||||| | Sbjct 8693236 ATGTCGATCATGAACTCTTTCGTCAATGATGTCTTCGAGCGCATCGCCGCCGAGGCTTCT 8693177 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | || ||| | ||||| || || ||||| || Sbjct 8693176 CGTCTTGCTCACTACAACAAGAGATCGACCATCTCATCCCGCGAAATTCAAACCGCTGTT 8693117 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| ||||||||| || ||||| |||| Sbjct 8693116 CGTTTGATCCTTCCAGGAGAGCTCGCCAAGCACGCCGTGTCTGAGGGAACCA 8693065 Score = 104 bits (114), Expect = 3e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| |||||||||||||| || || || | || | ||| ||| || Sbjct 8689493 ATCTACCGTGTGCTCAAGCAGGTCCATCCAGACACTGGTGTCTCTTCC------AAGGCC 8689546 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || ||||| || | |||| ||||||| | ||||||| | Sbjct 8689547 ATGTCAATCATGAACTCTTTCGTCAATGATGTCTTCGAGCGCATCGCCGCCGAGGCTTCT 8689606 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | || ||| | ||||| || || ||||| || Sbjct 8689607 CGTCTTGCTCACTACAACAAGAGATCGACCATCTCATCCCGCGAAATTCAAACCGCTGTT 8689666 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| ||||||||| || ||||| |||| Sbjct 8689667 CGTTTGATCCTTCCAGGAGAGCTCGCCAAGCACGCCGTGTCTGAGGGAACCA 8689718 Score = 95.1 bits (104), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| |||||||||||||| || || || | || | ||| ||| || Sbjct 8697663 ATCTACCGTGTGCTCAAGCAGGTCCATCCAGACACTGGTGTCTCTTCC------AAGGCC 8697610 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || ||||| || | | || ||||||| | |||| || | Sbjct 8697609 ATGTCAATCATGAACTCTTTCGTCAATGATGTCTTTGAGCGCATCGCCGCCGAAGCTTCT 8697550 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | || ||| | ||||| || || ||||| || Sbjct 8697549 CGTCTTGCTCACTACAACAAGAGATCGACCATCTCATCCCGCGAAATTCAAACCGCTGTT 8697490 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| ||||||||| || ||||| |||| Sbjct 8697489 CGTTTGATCCTTCCAGGAGAGCTCGCCAAGCACGCCGTGTCTGAGGGAACCA 8697438 >seq9 Length=17485439 Score = 127 bits (140), Expect = 3e-23 Identities = 179/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| || |||||| || |||||||| || ||||| || | | | | Sbjct 7697410 TCGTACTCTGTCTACATCTACCGTGTCCTCAAGCAAGTTCACCCAGACACTG--GAGTC- 7697354 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| || ||||||| |||||||||||||||||||| ||| | |||| |||||| Sbjct 7697353 TCCTCCAA--AG-CCATGTCTATCATGAACTCGTTTGTCAATGACGTCTTCGAGCGCATC 7697297 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| ||| || |||| || ||||||||| || ||| | ||||| Sbjct 7697296 GCTGCTGAGGCCTCTCGTCTTGCGCACTACAACAAGCGTTCTACCATCTCTTCTCGCGAA 7697237 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| ||||| || ||||| | | || || || |||| |||||||| || || Sbjct 7697236 ATCCAGACAGCCGTCCGTCTGATTCTTCCAGGAGAGCTTGCCAAACACGCCGTGTCTGAA 7697177 Query 725136 GGCACCA 725142 || |||| Sbjct 7697176 GGAACCA 7697170 Score = 122 bits (134), Expect = 1e-21 Identities = 178/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| || |||||| || |||||||| || ||||| || | | | | Sbjct 7831578 TCGTACTCTGTCTACATCTACCGTGTCCTCAAGCAAGTTCACCCAGACACTG--GAGTC- 7831634 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| || ||||||| |||||||||||||||||||| ||| | |||| |||||| Sbjct 7831635 TCCTCCAA--AG-CCATGTCTATCATGAACTCGTTTGTCAATGACGTCTTCGAGCGCATC 7831691 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| ||| || || | || ||||||||| || ||| | ||||| Sbjct 7831692 GCTGCTGAGGCCTCTCGTCTTGCTCACTACAACAAGCGTTCTACCATCTCTTCTCGCGAA 7831751 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| ||||| || ||||| | | || || || |||| |||||||| || || Sbjct 7831752 ATCCAGACAGCCGTCCGTCTGATTCTTCCAGGAGAGCTTGCCAAACACGCCGTGTCTGAA 7831811 Query 725136 GGCACCA 725142 || |||| Sbjct 7831812 GGAACCA 7831818 Score = 122 bits (134), Expect = 1e-21 Identities = 178/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| || |||||| || |||||||| || ||||| || | | | | Sbjct 7836933 TCGTACTCTGTCTACATCTACCGTGTCCTCAAGCAAGTTCACCCAGACACTG--GAGTC- 7836989 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| || ||||||| |||||||||||||||||||| ||| | |||| |||||| Sbjct 7836990 TCCTCCAA--AG-CCATGTCTATCATGAACTCGTTTGTCAATGACGTCTTCGAGCGCATC 7837046 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| ||| || || | || ||||||||| || ||| | ||||| Sbjct 7837047 GCTGCTGAGGCCTCTCGTCTTGCTCACTACAACAAGCGTTCTACCATCTCTTCTCGCGAA 7837106 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| ||||| || ||||| | | || || || |||| |||||||| || || Sbjct 7837107 ATCCAGACAGCCGTCCGTCTGATTCTTCCAGGAGAGCTTGCCAAACACGCCGTGTCTGAA 7837166 Query 725136 GGCACCA 725142 || |||| Sbjct 7837167 GGAACCA 7837173 Score = 118 bits (130), Expect = 2e-20 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||| || ||||| || | | | | |||||||| || || Sbjct 8460511 ATCTACCGCGTCCTCAAGCAAGTTCACCCAGACACTG--GAGTC-TCCTCCAA--AG-CC 8460458 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||||||||| ||| | |||| ||||||| | |||||| | Sbjct 8460457 ATGTCTATCATGAACTCGTTTGTCAATGACGTCTTCGAGCGCATCGCTGCTGAGGCCTCT 8460398 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| || ||| | ||||| |||||||| ||||| Sbjct 8460397 CGTCTTGCTCACTACAACAAGCGTTCTACCATCTCTTCTCGCGAAATCCAGACAGCCGTC 8460338 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| |||||||| || || || |||| Sbjct 8460337 CGTCTGATTCTTCCAGGAGAGCTTGCCAAACACGCCGTGTCTGAAGGAACCA 8460286 >seq1 Length=15455979 Score = 113 bits (124), Expect = 6e-19 Identities = 174/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| || |||||| || ||||||||||| ||||| |||| | | Sbjct 6557336 TCGTACTCTGTCTACATCTACCGTGTCCTCAAGCAGGTTCACCCAGATACCGGAGT---A 6557392 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 ||||| || | ||||||| ||||||||||| || ||||| ||| | |||| |||||| Sbjct 6557393 TCCTCGAA---GGCCATGTCCATCATGAACTCCTTCGTCAATGACGTCTTCGAACGCATC 6557449 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | || || ||| || || | || ||||||||| || ||| | ||||| Sbjct 6557450 GCTGCTGAAGCTTCTCGTCTTGCCCACTACAACAAGCGTTCGACCATCTCTTCCCGCGAA 6557509 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| || ||||| || ||||| | | || || |||||| ||||||||| || ||| Sbjct 6557510 ATCCAAACGGCCGTCCGTTTGATCCTTCCAGGAGAGTTGGCCAAGCACGCCGTTTCTGAG 6557569 Query 725136 GGCACCA 725142 || |||| Sbjct 6557570 GGAACCA 6557576 Score = 104 bits (114), Expect = 3e-16 Identities = 173/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| || |||||| || ||||||||||| ||||| || | | | | Sbjct 5548524 TCGTACTCTGTCTACATCTACCGTGTCCTCAAGCAGGTTCACCCAGACACTG--GAGTC- 5548468 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 ||||| || | | ||||| ||||||||||| || ||||||||| | |||| || ||| Sbjct 5548467 TCCTCGAA---GGCTATGTCCATCATGAACTCCTTCGTCAACGACGTCTTCGAACGTATC 5548411 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | ||||| ||| || || | || |||||| ||| || ||| | ||||| Sbjct 5548410 GCTGCTGAGGCTTCTCGTCTTGCCCACTACAACAAACGCTCAACCATCTCTTCCCGCGAA 5548351 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| || ||||| || ||||| | | || || |||| | ||||||||| || ||| Sbjct 5548350 ATCCAAACGGCCGTCCGTTTGATCCTTCCAGGAGAGTTGGCAAAGCACGCCGTTTCTGAG 5548291 Query 725136 GGCACCA 725142 || |||| Sbjct 5548290 GGAACCA 5548284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177775802175454