Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 >seq5 Length=14578851 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| |||| ||| || || |||| || |||||||| || ||||| Sbjct 4175945 CTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCAAA 4175886 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | | ||||||||| |||||| ||| | | | Sbjct 4175885 GATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 4175826 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||| || |||| ||||| || || || |||||||| || || Sbjct 4175825 CTCGATTGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTCAAAGTCTTGAC 4175766 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 4175765 GAAGATTTGCAT 4175754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791531984360