Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 1e-13 >seq5 Length=14578851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||| |||| | ||||| ||||| || || | || || || || ||||||| Sbjct 4174389 TTACCAGCGAAAATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTG 4174330 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||| | | |||| | |||||| | ||||||||| || ||||| |||| || || || Sbjct 4174329 GCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCAAGAGTGATAGTCTTTCCAGTA 4174270 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 ||||||||||| || || ||||| Sbjct 4174269 AGAGTTTTCACGAAAATCTGCAT 4174247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932499348104