Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 2e-14 seq4 91.5 2e-13 seq1 87.8 2e-12 >seq5 Length=14578851 Score = 95.1 bits (104), Expect = 2e-14 Identities = 292/443 (66%), Gaps = 14/443 (3%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || ||||||||||| | |||||| |||| | ||||| || | || | Sbjct 9912540 TAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCG 9912481 Query 110429 GACATCGTTGGACTTT-CCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGC 110485 | | | | | | ||| ||||| | ||| | ||| || ||| || ||||| Sbjct 9912480 G-CGTAGCTTGGCTTGGCCATGTGAATGTTGAGTGACTGGGA--TTGATCGATGAATGCT 9912424 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA-ATTTCCCAAACTGTGCGATA 110544 || || | || ||||| || || | |||||| | | | || ||||| || ||| | || Sbjct 9912423 CCACGATCGGCAGCCATCTCGATAATCTCCTTC-TGTGAGATCTCCCAGACGGTGAGGTA 9912365 Query 110545 GAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCAC 110604 || | ||||||||| ||||| || ||| ||| ||||| || || || || | Sbjct 9912364 AAGCTCCTTGATATCGTCTGGAATTCCTGGGATGTTCTGAATCGATCCATTG---TTGGC 9912308 Query 110605 CATGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAG 110661 ||||| | |||||| || | || ||| | || ||| | || || | | Sbjct 9912307 AATGAGGCGGTTCTTCATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCAT 9912248 Query 110662 GTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGT 110721 ||| |||||| || || ||||| | ||| | | ||||||||| | || Sbjct 9912247 GTGTGGGTTGACGATTTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGT 9912188 Query 110722 GTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 110781 |||||| |||| |||| || || || | ||| || |||||||| || ||||||||||| Sbjct 9912187 GTATGGCTCAATCGATTCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGG 9912128 Query 110782 TGCCATCAAAAGACTGTTACGAA 110804 ||||| | |||||||| |||| Sbjct 9912127 AGCCATGAGGAGACTGTTGCGAA 9912105 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439 || |||||||| |||||||||||||| ||||| | ||||| ||||| ||||||||| Sbjct 11383983 ACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCATGAAGTCAAAT 11384042 Query 122440 GGATTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACAC 122498 |||||||| |||| | | | ||| || | | | | ||| ||| |||| | || Sbjct 11384043 GGATTCTTGACGTTGTACAGCTTATCGCATCCGAGC-TCCTGGAGCAGATGATCGGCGAC 11384101 Query 122499 ATACTCAATGTACTCGGACATCTTCTCAG-AGTTCATACCGATGAGGTTACATGGGAGTG 122557 |||| ||||||| ||||||| || | ||||||| ||||| | || | ||||| | Sbjct 11384102 GAACTCGATGTACTGGGACATC-AGTCGGCAGTTCATTCCGATCATGTCAACGGGGAGGG 11384160 Query 122558 CGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 | || || |||| | | |||||| | || || ||| | | ||| Sbjct 11384161 CTTCGGTGAGGAACTCCTGCTCAATGGCGACAGCGTCTCTGATGAT 11384206 >seq4 Length=16627154 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 182697 TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACC 182756 || || ||||||||||| || ||||| | ||||||||| |||| || || || | |||| Sbjct 8906983 TTTCCACGAAGTGGGAAGACTCCGTACTTATCACGACCGACGATCGAAAGTCCGGAAACC 8907042 Query 182757 GCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGCC 182816 || | || || || ||||| ||||| || | ||||| ||||||| | || | | Sbjct 8907043 GCCAAAGTCTTAGCAGAATCTCCCTCAGTAAGGATGAGCGTACACTGTTGCGAATTTTTT 8907102 Query 182817 GTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACC 182854 || || || | ||| ||||| || | ||| |||||||| Sbjct 8907103 GTTCCAGCGTCGTTGGCGTCCTCGAGCTTTGGAATACC 8907140 >seq1 Length=15455979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 ||||| | ||||| ||||||||||||||||| | ||||| ||| | ||||| || Sbjct 5682515 TATGGAAGAGTTGCTCCACGATCCGGTCTCGCAGCCAAGCACTTCATTGATGTTGGGGCT 5682456 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 |||||| ||||| || || || || |||| ||| |||| ||||| | | | Sbjct 5682455 GGTGTTGTTGATAGTGATTACCGTGGAGAGATCAAGGTCCTTCTTTTCAACTTCAGCAAA 5682396 Query 164724 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 164774 | ||||||||||| ||||| || ||| | || ||||| || ||| |||| Sbjct 5682395 ACTGACTTTGAGGTGAAGAAGGGTGATAGAATTGCACAGCTCGTCTGTGAG 5682345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029118903200