Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 116 5e-21 seq4 93.3 5e-14 >seq5 Length=14578851 Score = 116 bits (128), Expect = 5e-21 Identities = 356/542 (66%), Gaps = 15/542 (3%) Strand=Plus/Minus Query 119031 TCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA 119090 || || |||||||||||||| ||||| | |||||| ||| |||| | || ||| || Sbjct 9911083 TCGACGCGCTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAACAAGTCACGAGCACGT 9911024 Query 119091 GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCAC 119150 | ||||| || || || | | | ||| || | |||||| |||||||| Sbjct 9911023 TCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAGATATCGGCGTGCCAT 9910964 Query 119151 GGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATAC 119204 || |||| ||| | |||| || | ||| | || ||| | || | || || Sbjct 9910963 GGCTCCAAGTAGATGGCGAATG-CTCCTG--GTCGTTTGTTACCTCCTTGATCAACGTAA 9910907 Query 119205 CTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTC 119264 | || ||| ||| | |||||||||||||| |||| |||| |||| ||||| || Sbjct 9910906 CGAGCGGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGATGTTCCATTGGTT 9910847 Query 119265 CCCCGAAT-AC-GAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTG 119322 || ||| || ||| | | | || | || | ||| | | | ||| || || || | Sbjct 9910846 CCGGCAATCACTGAGCC--AGTTGCACGGATCTTGTGCACATTGAGACCGATGCCTCCAG 9910789 Query 119323 CCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCAC 119382 | | ||| || || | ||||||| | | | | || ||||||| || |||||||| Sbjct 9910788 CACTCTTCGAAATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCGAGAATCGAGTCCT 9910729 Query 119383 CCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGA 119442 | | | | | | |||||| ||||| || || | | || |||| |||||||| Sbjct 9910728 CGCTCATCGTCAACAAGAAGCATGAAGACATCTGTGGACGGCACGTTCCAGAGTTGAAGA 9910669 Query 119443 GAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTTGTCGTAGGTCTCCAAGACG 119501 ||||||| | || || | | |||| || ||||||| || ||| ||||| | | || Sbjct 9910668 GAGTTGGAGAGGCATGTGT-CATGTACCGTTCGGACATCAAGTTGTACGTCTCAATGGCG 9910610 Query 119502 GCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTT 119561 |||| |||||||| ||||| || || || | ||| ||||| | ||| | || ||| || Sbjct 9910609 GCGGAAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAGCATTTGCTGTGGTCTT 9910550 Query 119562 TC 119563 || Sbjct 9910549 TC 9910548 Score = 109 bits (120), Expect = 7e-19 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 129736 AACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAA 129795 ||| ||||||||||||||||| ||||| || || | ||| |||||||| || ||||| Sbjct 11383982 AACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCATGAAGTCAAA 11384041 Query 129796 TGGGTTCTTTGAGTTCCA-AATTGCTGGCACTCCAATCTGTTTGAGGAGACGATCCGAGA 129854 ||| ||||| ||| | | | | ||| ||| | || | ||| ||| |||| | || Sbjct 11384042 TGGATTCTTGACGTTGTACAGCTTATCGCA-TCCGAGCTCCTGGAGCAGATGATCGGCGA 11384100 Query 129855 CGTACTCAATGTACTCAGACATCTTCTCGG-AGTTCATACCGATGAGGTTACATGGGAGC 129913 || |||| ||||||| |||||| |||| ||||||| ||||| | || | ||||| Sbjct 11384101 CGAACTCGATGTACTGGGACATC-AGTCGGCAGTTCATTCCGATCATGTCAACGGGGAGG 11384159 Query 129914 GCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTC 129951 || || || |||| ||| ||||||| | ||||| || Sbjct 11384160 GCTTCGGTGAGGAACTCCTGCTCAATGGCGACAGCGTC 11384197 Score = 105 bits (116), Expect = 8e-18 Identities = 289/439 (66%), Gaps = 8/439 (2%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || |||||||| |||| |||||| | || | |||||||| | | Sbjct 9912541 GTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGC 9912482 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 || | | |||| | ||||| | ||| | ||||||||||||||||| ||| Sbjct 9912481 GGCGTAGCTTGGCTTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCC 9912422 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 ||||| || ||||| || || | |||||| ||| ||||| || || ||| || Sbjct 9912421 ACGATCGGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAG 9912362 Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 | ||| ||||| ||||| || | ||| || || || |||||| ||| | || Sbjct 9912361 CTCCTTGATATCGTCTGGAATTCCTGGGATGTTCTGAATCGATCCA---TTGTTGGCAAT 9912305 Query 118082 GA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 118138 || | | |||||| || | | ||| | || ||| | ||||| || | || Sbjct 9912304 GAGGCGGTTCTTCATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATGTG 9912245 Query 118139 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGT 118197 ||||| | || ||||| | ||| || | ||| ||||| || | |||| Sbjct 9912244 TGGGTTGACGATTTGGAAGTCACCGGAGAGCACACGAC-GAGAGTAGATGTTCGAGGTGT 9912186 Query 118198 ATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 118257 ||||||||| | || ||||| || | ||| || || ||||| || || ||||| || | Sbjct 9912185 ATGGCTCAATCGATTCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAG 9912126 Query 118258 CCATGAGAAGGCTGTTACG 118276 ||||||| || ||||| || Sbjct 9912125 CCATGAGGAGACTGTTGCG 9912107 >seq4 Length=16627154 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 179955 CTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAAC 180014 ||| ||||| || ||||| || ||||| | ||||||||| || | || || || | ||| Sbjct 8906982 CTTTCCACGAAGTGGGAAGACTCCGTACTTATCACGACCGACGATCGAAAGTCCGGAAAC 8907041 Query 180015 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGC 180074 || | ||||| || ||||| ||||| || | |||||||||||||| | || | | Sbjct 8907042 CGCCAAAGTCTTAGCAGAATCTCCCTCAGTAAGGATGAGCGTACACTGTTGCGAATTTTT 8907101 Query 180075 CGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATACC 180113 || || || | ||| ||||| || | ||| |||||||| Sbjct 8907102 TGTTCCAGCGTCGTTGGCGTCCTCGAGCTTTGGAATACC 8907140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432362928520