Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-19 seq4 93.3 5e-14 seq1 86.0 7e-12 >seq5 Length=14578851 Score = 111 bits (122), Expect = 2e-19 Identities = 296/444 (67%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 105501 TTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 105560 |||| ||||||||||||||||||||||||||||| || |||||||| || ||| | || | Sbjct 9912105 TTCGCAACAGTCTCCTCATGGCTCCAATGCCAACTGCTTCCACCGCTCAGATCCTCGGAA 9912164 Query 105561 ATAATGAATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGA 105619 | || |||| |||| || ||||| |||||||||| ||| | | ||| | || Sbjct 9912165 ACAACGAATCGATTGAGCCATACACCTCGAACATCTACTCT-CGTCGTGTGCTCTCCGGT 9912223 Query 105620 GAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCC 105679 || || || |||||| || | || | || | |||| || | ||| || Sbjct 9912224 GACTTCCAAATCGTCAACCCACACATGCTGAAGGATTTGGTCGAGAGAGGATTGTGGACC 9912283 Query 105680 AAGGATATGAAGGA---TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGAT 105736 | || |||||| | ||||| | || ||| || ||||| || || | Sbjct 9912284 GATGAGATGAAGAACCGCCTCATTGCCAA---CAATGGATCGATTCAGAACATCCCAGGA 9912340 Query 105737 ATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTC 105796 |||||| | || || ||| || | |||| ||| || ||||| ||| |||||| | Sbjct 9912341 ATTCCAGACGATATCAAGGAGCTTTACCTCACCGTCTGGGAGATCTCACAGAAGGAGATT 9912400 Query 105797 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCT 105854 || || ||||| || |||||||| ||||| |||||| || ||| | || | Sbjct 9912401 ATCGAGATGGCTGCCGATCGTGGAGCATTCATCGATCAA--TCCCAGTCACTCAACATTC 9912458 Query 105855 TCATGG-AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAG 105913 ||||| ||| | | | | | || || | || |||||| | ||| | ||||||||| Sbjct 9912459 ACATGGCCAAGCCAAGCTACG-CCGCCATCACATCAATGCACTTCTACGGATGGAAGAAG 9912517 Query 105914 GGTCTCAAAACGGGGATGTATTAC 105937 || ||||| || || ||||| ||| Sbjct 9912518 GGACTCAAGACTGGAATGTACTAC 9912541 >seq4 Length=16627154 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 169331 TCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACG 169390 |||||||| || | ||| |||||||| |||||||| ||||| | ||||||||| ||| Sbjct 8906965 TCGCGAACGTTGAGAAGCTTTCCACGAAGTGGGAAGACTCCGTACTTATCACGACCGACG 8907024 Query 169391 ACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTA 169450 | || || || | || || | |||||| || || || ||||| || | |||||||||| Sbjct 8907025 ATCGAAAGTCCGGAAACCGCCAAAGTCTTAGCAGAATCTCCCTCAGTAAGGATGAGCGTA 8907084 Query 169451 CATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 169506 || | | || | | || || || | ||| || || || | || |||||||| Sbjct 8907085 CACTGTTGCGAATTTTTTGTTCCAGCGTCGTTGGCGTCCTCGAGCTTTGGAATACC 8907140 >seq1 Length=15455979 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 154106 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCG 154165 ||||| | ||||| |||||||| |||||||| | || || || | ||||| || Sbjct 5682515 TATGGAAGAGTTGCTCCACGATCCGGTCTCGCAGCCAAGCACTTCATTGATGTTGGGGCT 5682456 Query 154166 GGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCACGGAGAC 154225 |||||||||||| || ||| || || |||| ||| |||||||||| | | | Sbjct 5682455 GGTGTTGTTGATAGTGATTACCGTGGAGAGATCAAGGTCCTTCTTTTCAACTTCAGCAAA 5682396 Query 154226 AAAGACTTTGAGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTTGAGA 154277 | ||||||||||| |||| |||||| | || ||||| || || ||||| Sbjct 5682395 ACTGACTTTGAGGTGAAGAAGGGTGATAGAATTGCACAGCTCGTCTGTGAGA 5682344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258124291080