Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 143 3e-29 >seq5 Length=14578851 Score = 143 bits (158), Expect = 3e-29 Identities = 376/566 (66%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || || ||||||||| |||||||||| ||| || | || || || || || | Sbjct 9911131 AGTCCTGGGCACTCGCATGGGCACATCAACGACCAATCTTGATCTTTTTCGACGCGCTTC 9911072 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 |||||||| || || | ||| || ||| ||| | ||| || ||| ||| || | | Sbjct 9911071 ATGAAGAGATCTGGCACCCAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCTTC-TGG 9911013 Query 79444 CCCTG-GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 || | |||| || || | | ||| || | ||| ||||||||||| ||||||| || Sbjct 9911012 TCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAGATATCGGCGTGCCATGGCTCCAAGTA 9910953 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 ||||||||| | || || ||| || || || | ||||| || || |||||||| Sbjct 9910952 GATGGCGAATGCTCCTGGTCGTTTGTTACCTCCTTGATCAACGTAACGAGCGGTGTTGTT 9910893 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGT 79622 | | || || ||||| || | || || | || || || || ||| || || Sbjct 9910892 GTAGACACGAAGCATTGGTATGAGTCCATTGGATGTTCCATTGGTTCCGGCAATCACTGA 9910833 Query 79623 ACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGT 79681 || | || || || || | ||| | || |||||||| || | | ||| || || Sbjct 9910832 GCCAGTTGCACGGATCTT-GTGCACATTGAGACCGATGCCTCCAGCACTCTTCGAAATCA 9910774 Query 79682 GCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCA 79741 | ||||||| ||| | || |||||||| || |||||||| || |||| | | || Sbjct 9910773 GAGCGCACTGCTTCAAAGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACA 9910714 Query 79742 GGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGT 79801 |||||| ||||||||||| | ||| || | ||||||||| || || | || | Sbjct 9910713 AGAAGCATGAAGACATCTGTGGACGGCACGTTCCAGAGTTGAAGAGAGTTGGAGAGGCAT 9910654 Query 79802 GCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGG-GAGGTCGTCG 79860 | || | | || || | ||||| | ||||||||| || || |||| | ||| | Sbjct 9910653 GTGTCATGTACCGTTCGGACATCAAGTTGTACGTCTCAATGGCG-GCGGAAATGTCTTTT 9910595 Query 79861 CCGTGGATGCCGACCGCGACGCGCAT 79886 |||||||| || | ||||| ||||| Sbjct 9910594 CCGTGGATTCCAATGGCGACACGCAT 9910569 Score = 120 bits (132), Expect = 3e-22 Identities = 141/189 (75%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCAT--AC 78247 || ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| | Sbjct 9912549 GTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAT 9912490 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 || || ||| || || || ||||| |||||||| |||||||| || |||| Sbjct 9912489 GTGATGGC--GGCGTAGCTTGGCTTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGA 9912432 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 || | || || || ||||| ||||| ||||| | | ||| || | |||||||||| || Sbjct 9912431 TGAATGCTCCACGATCGGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGG 9912372 Query 78368 TCCGGTAAA 78376 | |||||| Sbjct 9912371 TGAGGTAAA 9912363 Score = 96.9 bits (106), Expect = 4e-15 Identities = 335/518 (65%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| || ||||| | | || | | || || || | || || || |||||| Sbjct 9910617 GAGACGTACAACTTGATGTCCGAACGGTACATGACACATGCCTCTCCAACTCTCTTCAAC 9910676 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 | || ||| | || |||||||| || ||| | || | |||| || ||| Sbjct 9910677 TCTGGAACGTGCCGTCCACAGATGTCTTCATGCTTCTTGTTGACGATGAGCGAGGACTCG 9910736 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 ||| || |||||||| || | ||| ||||||| | || || ||| | | || || Sbjct 9910737 ATTCTCGGAATCTACGACACTTTGAAGCAGTGCGCTCTGATTTCGAAGAGTGCTGGAGGC 9910796 Query 19346 ATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGG 19404 ||||| || | ||| | || ||||| | | ||| || || || || || || Sbjct 9910797 ATCGGTCTCAATGTGCAC-AAGATCCGTGCAACTGGCTCAGTGATTGCCGGAACCAATGG 9910855 Query 19405 AGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAA 19464 | | || | || || | |||||||| || |||| ||||||||| || | ||||| | Sbjct 9910856 AACATCCAATGGACTCATACCAATGCTTCGTGTCTACAACAACACCGCTCGTTACGTTGA 9910915 Query 19465 CCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGA 19524 || || || |||||| || | |||||||||||| | |||||||||||||| || Sbjct 9910916 TCAAGGAGGTAACAAACGACCAGGAGCATTCGCCATCTACTTGGAGCCATGGCACGCCGA 9910975 Query 19525 CGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATG--CGCTGTCGC 19582 || | || || | | || || |||| | ||| || ||| | || ||| Sbjct 9910976 TATCTTCGAGTTTGTTGCTCTTCGAAAGAACACCG--GACCAGAAGAGGAACGTGCTCGT 9911033 Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642 ||| | ||| ||| | ||| | || || || |||||| || || || || || || Sbjct 9911034 GACTTGTTCTTGGCTCTCTGGGTGCCAGATCTCTTCATGAAGCGCGTCGAAAAAGATCAA 9911093 Query 19643 GAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 || ||| |||||||||| ||| ||||| || || Sbjct 9911094 GATTGGTCGTTGATGTGCCCATGCGAGTGCCCAGGACT 9911131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522283642480