Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 185 1e-41 >seq5 Length=14578851 Score = 185 bits (204), Expect = 1e-41 Identities = 391/569 (69%), Gaps = 12/569 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253 ||||| |||||| | || |||||||| | ||| | ||| | | |||||||||| | Sbjct 9910569 ATGCGTGTCGCCATTGGAATCCACGGAAAAGACATTTCCGCC-GCCATTGAGACGTACAA 9910627 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 ||| ||| | || |||| | || || ||| | ||||| || |||||| |||| ||| Sbjct 9910628 CTTGATGTCCGAACGGTACATGACACATGCCTCTCCAACTCTCTTCAACTCTGGAACGTG 9910687 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 | || |||||||| |||||| || || |||||| || |||||||| ||| || Sbjct 9910688 CCGTCCACAGATGTCTTCATGCTTCTTGTTGACGATGAGCGAGGACTCGATTCTCGGAAT 9910747 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 |||||| || | ||| |||| || | || || ||| | | || || |||||| || | Sbjct 9910748 CTACGACACTTTGAAGCAGTGCGCTCTGATTTCGAAGAGTGCTGGAGGCATCGGTCTCAA 9910807 Query 53434 C-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 ||| | || ||||||| | ||| || || || || || || || ||| Sbjct 9910808 TGTGCAC-AAGATCCGTGCAACTGGCTCAGTGATTGCCGGAACCAATGGAACATCCAATG 9910866 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 || || | || ||||| || |||| ||||||||| || || ||||| | || || ||| Sbjct 9910867 GACTCATACCAATGCTTCGTGTCTACAACAACACCGCTCGTTACGTTGATCAAGGAGGTA 9910926 Query 53553 GGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 || || | ||| | | |||||||||||| | ||||| ||||||||||| || | ||| Sbjct 9910927 ACAAACGACCAGGAG-CATTCGCCATCTACTTGGAGCCATGGCACGCCGATATCTTCGAG 9910985 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGAC--GAAGAGATGCGCTGC-CGTGACCTGTTT 53668 ||| | | || || ||| || | ||| |||||| || ||| |||||| |||| Sbjct 9910986 TTTGTTGCTCTTCGAAAGAA-CACCG-GACCAGAAGAGGAACG-TGCTCGTGACTTGTTC 9911042 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 ||||| ||| | || || ||||||||| | || || || || | || |||| Sbjct 9911043 TTGGCTCTCTGGGTGCCAGATCTCTTCATGAAGCGCGTCGAAAAAGATCAAGATTGGTCG 9911102 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 |||||||||| ||||||||| || || Sbjct 9911103 TTGATGTGCCCATGCGAGTGCCCAGGACT 9911131 Score = 131 bits (144), Expect = 2e-25 Identities = 304/451 (67%), Gaps = 17/451 (4%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| || ||| |||| ||||||||||| || || || ||||||||| | || ||| Sbjct 9912107 CGCAACAGTCTCCTCATGGCTCCAATGCCAACTGCTTCCACCGCTCAGATCCTCGGAAAC 9912166 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 ||||| || | ||||| ||||| | ||||||||| || || || | ||||| Sbjct 9912167 AACGAATCGATTGAGCCATACACCTCGAACATCTACTCTCGTCGTGTGCTCTCCGGTGAC 9912226 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| ||| | | ||||| || ||| ||||| | Sbjct 9912227 TTCCAAATCGTCAACCCACACATGCTGAAGGATTTGGTCGAGAGAGGATTGTGGACCGAT 9912286 Query 55664 CAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCT----GGAGATT 55717 |||| |||| || | | ||| ||| || || | ||||| | ||| ||| Sbjct 9912287 GAGATGAAGAACCGCCTCAT-TGCC-AACAATGGATCGATTCAGAACATCCCAGGA-ATT 9912343 Query 55718 CCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777 || | |||||||| |||||| || || |||||||| |||||||| | || Sbjct 9912344 CCAGACGATATCAAGGAGCTTTACCTCACCGTCTGGGAGATCTCACAGAAGGAGATTATC 9912403 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG 55837 || ||| ||| |||||||| || | |||||| || |||||||| || ||||| |||| Sbjct 9912404 GAGATGGCTGCCGATCGTGGAGCATTCATCGATCAATCCCAGTCACTCAACATTCACATG 9912463 Query 55838 GAGAATCC----TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 | || || | | | | ||| | | || |||||||| ||||| ||||||||||| Sbjct 9912464 GCCAAGCCAAGCTACGCCG-CCA---TCACATCAATGCACTTCTACGGATGGAAGAAGGG 9912519 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACC 55924 ||||||||| || |||||||| |||| ||| Sbjct 9912520 ACTCAAGACTGGAATGTACTACTTGCGTACC 9912550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213489646600