Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5 158 1e-33 >seq5 Length=14578851 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| ||| | || || || ||| | Sbjct 1551823 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTCCCCTCGAAGTCGAGGCCTCC 1551764 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | |||||||| || || |||||||| |||||||| ||||||||| Sbjct 1551763 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 1551704 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || || || |||||||||||||||| ||||| || | ||||| || Sbjct 1551703 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 1551644 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || | || | |||||||| || || Sbjct 1551643 ATCCAGAAGGAGTCCACTCTCCACTTGGTTCTCCGTCTTCGTGGAGG 1551597 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||||||||| |||||||| || || ||||| || | Sbjct 4175023 ATGCAGATCTTCGTCAAGACGCTTACCGGAAAGACTATCACCCTCGAGGTCGAAGCTTCG 4175082 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | |||||||| || || |||||||| ||||| || ||||| ||| Sbjct 4175083 GACACTATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 4175142 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || ||||| ||||| || ||||||| |||||||| | ||||| || Sbjct 4175143 CAACGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAAC 4175202 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| |||||||| || Sbjct 4175203 ATCCAGAAGGAGTCCACTCTCCA 4175225 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| | ||||| ||||| || || || || || || | Sbjct 4174794 AATGCAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTC 4174853 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | || || || ||||| ||||||||||||||||| |||||||| Sbjct 4174854 GGACACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCA 4174913 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || || || |||||||||||||||| ||||| || | || || || Sbjct 4174914 GCAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAA 4174973 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| ||||| || | || || || || || Sbjct 4174974 CATCCAAAAGGAGTCTACTCTCCATCTCGTTCTTCGCCTCCGTGGAGG 4175021 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | ||||| ||||| || ||| | || || || | Sbjct 4175754 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4175813 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || ||||||||||| ||||| || ||||||||| Sbjct 4175814 GACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAG 4175873 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| |||||||| | || || | | ||||| || Sbjct 4175874 CAGCGCTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGACGCACTTTGTCCGACTACAAC 4175933 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| || || |||||||| || | |||||||| || ||| Sbjct 4175934 ATCCAAAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTTCGTGGAGGA 4175981 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| || || || || || || ||| | || || ||| | Sbjct 4173736 AATGCAAATCTTCGTCAAGACACTCACTGGAAAAACCATCACTTTGGAAGTCGAGGCTTC 4173795 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | || || ||||| || |||||||||||||| || |||||||| Sbjct 4173796 CGATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCA 4173855 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || || || ||||| || ||||||| | || || | ||||| || Sbjct 4173856 GCAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAA 4173915 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||||| |||||||| Sbjct 4173916 CATCCAGAAGGAATCGACTCTTCA 4173939 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| ||||| ||| | || || || ||||| || | ||||| ||| | Sbjct 4173506 ATCATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCTTGGAGGTGGAGGCT 4173565 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| ||| | ||| | || || ||||| || |||||||||||||| || |||||| Sbjct 4173566 TCCGATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGAC 4173625 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||| | || || || || || ||||| || ||||||| | || || | ||||| Sbjct 4173626 CAGCAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTAC 4173685 Query 27583 AATGTCCAAAAGGAATCCACTCTTCA 27608 || |||| ||||| |||||||| || Sbjct 4173686 AACATCCAGAAGGAGTCCACTCTCCA 4173711 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || ||||| || |||||||| |||||||||||||| | Sbjct 4174246 AATGCAGATTTTCGTGAAAACTCTTACTGGAAAGACTATCACTCTTGAGGTTGAAGCCTC 4174305 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | || || || || ||||||||||| |||||||| ||||| || Sbjct 4174306 GGACACTATTGAAAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCA 4174365 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | ||||| ||||||||| Sbjct 4174366 GCAGCGATTGATTTTCGCTGGTAAG 4174390 Score = 102 bits (112), Expect = 9e-17 Identities = 284/427 (67%), Gaps = 13/427 (3%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||| |||||||| || |||||||| ||||||||||| ||||| | |||||| || Sbjct 9912549 GTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAT 9912490 Query 80098 CTGA--GCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGA 80155 ||| || || | | || || ||||| ||||| || ||||| || ||| || Sbjct 9912489 GTGATGGCGGCGTA--GCTTGGCTTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGA 9912432 Query 80156 TGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTG 80215 |||| || |||||||| || ||||| || ||||| ||| |||| || ||||| || | Sbjct 9912431 TGAATGCTCCACGATCGGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGG 9912372 Query 80216 TACGATACACCTTACGAAGCTCCTCTGGAATGTCC--AGATTTTGCACACTGCCACCGTC 80273 | | || | || | || |||||||| ||| ||| || | | | || | Sbjct 9912371 TGAGGTAAAGCTCCTTGATATCGTCTGGAAT-TCCTGGGATGTT-CTGAATCGATCCATT 9912314 Query 80274 CTTTACAAT---TTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTT 80330 || |||| | || |||| ||| ||||| | || || | || ||| || Sbjct 9912313 GTTGGCAATGAGGCGGTTCTTCATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTT 9912254 Query 80331 CACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGT 80389 || | ||| ||| | || || || || | ||| ||||| ||| || | || Sbjct 9912253 CAGCATGTGTGGGTTGACGATTTGGAAGTCACCGGAGAGCACACGACG-AGAGTAGATGT 9912195 Query 80390 TTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCG 80449 | | ||||| ||||||| | ||||||||||||||||||||||| ||| || || | Sbjct 9912194 TCGAGGTGTATGGCTCAATCGATTCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTG 9912135 Query 80450 GCATCGG 80456 |||| || Sbjct 9912134 GCATTGG 9912128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || || || || || || || || || || | Sbjct 4173964 AATGCAGATCTTCGTCAAGACACTCACTGGAAAAACCATCACACTCGAAGTCGAAGCCTC 4174023 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | ||||||||||| || |||||||| |||||||| ||||| || Sbjct 4174024 CGACACCATTGAGAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATTCCACCAGATCA 4174083 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | | || ||||| |||||| Sbjct 4174084 GCAAAGATTGATCTTTGCCGGTAAG 4174108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| | ||||| ||||| || || || || || || | Sbjct 4174520 AATGCAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTC 4174579 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | || || || || ||||||||||| ||||| || |||||||| Sbjct 4174580 GGACACTATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCA 4174639 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | ||||| ||||||||| Sbjct 4174640 GCAGCGATTGATTTTCGCTGGTAAG 4174664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307783701040