Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5 122 5e-23 >seq5 Length=14578851 Score = 122 bits (134), Expect = 5e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | |||||| ||||||||| |||||| || ||||| || || ||| Sbjct 4173735 CCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 4173676 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || ||||| || || ||||| || || | | ||| ||||| || || Sbjct 4173675 AGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 4173616 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| ||| ||| | ||| || | || || || |||||| Sbjct 4173615 ATTCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCAC 4173557 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || ||||| || || |||||||| || || || |||||| Sbjct 4173556 CTCCAAGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCATG 4173508 Score = 100 bits (110), Expect = 2e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||||||||| ||||||||| ||||| ||||| ||||| || || | || || ||||| Sbjct 4174998 ATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTG 4174939 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || | | ||| ||||| || || | ||||||||||||| ||| | Sbjct 4174938 CTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT-TGAATCT 4174880 Query 34623 TTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680 | | ||| || | || |||| | ||| || ||||| | ||| ||||| || ||| Sbjct 4174879 TGGCTTTGACATTCTCGATGGTGTCCGAAGCT-TCGACTTCGAGGGTGATCGTCTTTCCG 4174821 Query 34681 GTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || |||||||| Sbjct 4174820 GTCAATGTCTTGACGAAGATCTGCAT 4174795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728192273511