Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 205 2e-47 >seq5 Length=14578851 Score = 205 bits (226), Expect = 2e-47 Identities = 181/226 (80%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | |||||||| || || || ||||| ||||||||||| ||||||| || Sbjct 4175475 TCCACGGAGACGAAGGACAAGATGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGACAG 4175416 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| || |||||||||| ||||| || |||||||| || | |||||||| || || | Sbjct 4175415 GGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGGAT 4175356 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||| ||||||||||| || |||||||||||||||||||| ||| || || Sbjct 4175355 TCCTTCCTTATCCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACTTC 4175296 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||| |||||||| || |||||||| || || | ||||||| Sbjct 4175295 GAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4175250 Score = 165 bits (182), Expect = 2e-35 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || || || ||||| ||||| ||||||||||| ||||| | ||| Sbjct 4175019 TCCACGGAGGCGAAGAACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAG 4174960 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||| || || ||||| || |||||||| || | || ||||| || |||| Sbjct 4174959 AGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAAT 4174900 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| |||||||| || ||||| ||| || || ||||||||||| || ||| || || Sbjct 4174899 TCCCTCCTTGTCTTGAATCTTGGCTTTGACATTCTCGATGGTGTCCGAAGCTTCGACTTC 4174840 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| |||||||||||||| || | ||||| || || | ||||||| Sbjct 4174839 GAGGGTGATCGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCATT 4174794 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| || |||| ||||| | |||||| Sbjct 4175234 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCC 4175175 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||||| || || || || | |||||||||||| Sbjct 4175174 TCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCT 4175115 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || || ||||| || ||| |||||||| ||||| ||| Sbjct 4175114 TGGATCTTAGCCTTGACATTCTCAATAGTGTCCGAAGCTTCGACCTCGAGGGTGATAGTC 4175055 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || | |||||| Sbjct 4175054 TTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4175023 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | ||| ||||||||||| || |||||||| || || | || Sbjct 1551599 TCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAG 1551658 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||| || || ||||| || |||||||| | | ||| ||||| || |||| Sbjct 1551659 AGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAAT 1551718 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| |||||||| || || || |||||||| || ||| || || || Sbjct 1551719 TCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTC 1551778 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| | || ||||| ||||| |||||||| || || | ||||| Sbjct 1551779 GAGGGGAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 1551823 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || || ||||| || ||||| ||||||||||| || || | | Sbjct 4175978 TCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAA 4175919 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||| || || |||||||| || || ||||| | ||| || ||||| || || | Sbjct 4175918 AGTGCGTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGAT 4175859 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||||||||||||| || || || ||||| ||||| || ||| || || Sbjct 4175858 TCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAAGCTTCGACTTC 4175799 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | |||||| |||||||| || | |||||| || || | ||||| Sbjct 4175798 CAAAGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 4175754 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| || |||| ||| || |||||||| Sbjct 4173720 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCC 4173661 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || | || ||||| || || | ||| |||||||| Sbjct 4173660 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 4173601 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || |||||||| || || || ||||| | ||||| || Sbjct 4173600 TGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAAGGTGATAGTT 4173541 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | || || || || | ||||| Sbjct 4173540 TTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4173509 Score = 127 bits (140), Expect = 5e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || | || || || || || |||| ||||||||||||||||||||| Sbjct 4174390 CTTACCAGCGAAAATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTT 4174331 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| |||||||| || ||||| ||| ||||||||| |||||||| |||||||| || Sbjct 4174330 GGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCAAGAGTGATAGTCTTTCCAGT 4174271 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || | ||||||| Sbjct 4174270 AAGAGTTTTCACGAAAATCTGCATT 4174246 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || | || || ||||| || || | ||||||||||||||||||||| Sbjct 4174664 CTTACCAGCGAAAATCAATCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTT 4174605 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || || ||||| ||||| || ||| || ||||| |||||||||||||| || Sbjct 4174604 GGCTTTGACATTCTCGATAGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGT 4174545 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | ||||| || || | ||||||| Sbjct 4174544 CAATGTCTTGACGAAGATCTGCATT 4174520 Score = 100 bits (110), Expect = 7e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | | ||| || || || |||| |||||||||||| ||||| || Sbjct 4174108 CTTACCGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTT 4174049 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || |||||||| ||| ||| || ||||| ||||| || ||||| || Sbjct 4174048 AGCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGT 4173989 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| || || | ||||||| Sbjct 4173988 GAGTGTCTTGACGAAGATCTGCATT 4173964 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| | | |||||| || || || | ||||||||||||||||||||| | Sbjct 4175618 CCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCT 4175559 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || || ||||| || ||| || || | |||||| |||||||| || | | Sbjct 4175558 TTGACATTCTCAATAGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTCAAA 4175499 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| Sbjct 4175498 GTCTTGACGAAGATTTGCAT 4175479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146549449955