Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5 125 6e-24 >seq5 Length=14578851 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | |||||| || || ||| ||| || || || || || || | | Sbjct 4173735 CCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 4173676 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || |||| | | || |||||||| || || || || || || | ||||||||| |||||| Sbjct 4173675 AGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 4173616 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||| ||||| |||||| ||||| || | | |||||| | |||||| Sbjct 4173615 -ATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCAC 4173557 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||||| ||||||| |||| |||||| || ||||||||||| Sbjct 4173556 CTCCAAGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4173509 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | ||| | ||||| || || || || || || || || || || | | Sbjct 4173963 CCTCCTCTGAGGCGGAGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAA 4173904 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || |||| | | || |||||||| || || || || || || | ||||||||| |||||| Sbjct 4173903 AGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 4173844 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||| ||||| |||||| ||||| || | | |||||| | ||| || Sbjct 4173843 -ATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCGAC 4173785 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| ||||||| || || || || || ||||||||||| Sbjct 4173784 TTCCAAAGTGATGGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 4173737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543678723071