Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5 105 5e-18 >seq5 Length=14578851 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || | || ||||| |||||||| |||||||| || | | Sbjct 4174794 AATGCAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTC 4174853 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | ||| | || | || ||||| || || | || ||||| | Sbjct 4174854 GGACACCATCGAGAATGTCAAAGCCAAGA-TTCAAGACAAGGAGGGAATTCCACCAGACC 4174912 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || || ||||| || ||||| || || | ||| ||| | |||||||| Sbjct 4174913 AGCAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACA 4174972 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| ||||| ||||| || | ||| | ||| Sbjct 4174973 ACATCCAAAAGGAGTCTACTCTCCATCTCGTT 4175004 Score = 98.7 bits (108), Expect = 7e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| || || ||||| || |||||||| || ||||| || | Sbjct 4174246 AATGCAGATTTTCGTGAAAACTCTTACTGGAAAGACTATCACTCTTGAGGTTGAAGCCTC 4174305 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||| |||||| | ||| || || ||||| ||||| | || |||||||| Sbjct 4174306 GGACACTATTGAAAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCA 4174365 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 ||||| || || || || || || Sbjct 4174366 GCAGCGATTGATTTTCGCTGGTAA 4174389 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || || || ||||| || |||||||||||||| || | | Sbjct 4175250 AATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAAGTCGAAGCTTC 4175309 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || || || || || ||||| | || ||||| || Sbjct 4175310 TGACACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCA 4175369 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || || ||||| || ||| ||||||| | | || | |||||||| Sbjct 4175370 ACAGAGACTCATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACCCTGTCGGATTACAA 4175429 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| ||||| ||||| ||| | ||| Sbjct 4175430 CATCCAAAAGGAGTCAACACTCCAT 4175454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008088146436