Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 206 4e-48 >seq5 Length=14578851 Score = 206 bits (228), Expect = 4e-48 Identities = 472/701 (67%), Gaps = 12/701 (2%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 || ||||| |||||||| |||||| | ||| ||||| || |||||||||||| ||| Sbjct 9911158 TCGAATTCCTCTCCCCAGCAATCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 9911099 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || || ||||| | || || ||||| |||||||| || | ||| ||||| | || Sbjct 9911098 CAATCTTGATCTTTTTCGACGCGCTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAAC 9911039 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | || || | | | ||||| ||| || |||||| |||| | | |||||| | Sbjct 9911038 AAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAG 9910979 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 ||||| | |||||||| || | || || || | |||| |||||||| |||||||| Sbjct 9910978 ATATCGGCGTGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGTTTGTTACCTCCT 9910919 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 ||||| | || | |||||||| || || || | | |||||| || | || || ||| Sbjct 9910918 TGATCAACGTAACGAGCGGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGAT 9910859 Query 78225 GTTCCATTTGTTCCAGAAATATAACT--TCCACTTGCGCGAATAT--TACTAATGGATAT 78280 |||||||| ||||| | | || ||| ||| |||| || || | | | || || | Sbjct 9910858 GTTCCATTGGTTCCGGCA--ATCACTGAGCCAGTTGCACGGATCTTGTGCACATTGAGA- 9910802 Query 78281 CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACC 78340 || || ||||| || |||| || || |||||||| | ||||| || |||||||| || Sbjct 9910801 -CCGATGCCTCCAGCACTCTTCGAAATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCC 9910743 Query 78341 CTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 78399 || ||| || |||| || || ||| || || |||||| || || | | Sbjct 9910742 GAGAATCGAGTCCTCGCTCATCGTCAACAAG-AAGCATGAAGACATCTGTGGACGGCACG 9910684 Query 78400 TTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGT 78459 |||| | || || | || ||||| ||||| || | | ||| || | | |||| Sbjct 9910683 TTCCAGAGTTGAAGAGAGTTGGAGAGGCATGTGTCATGTACCGTTCGGACATCAAGTTGT 9910624 Query 78460 ATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACA 78519 | || ||||| || | ||||| | || ||||| | || |||||||||| || Sbjct 9910623 ACGTCTCAATGGCGGCGGAAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAGCA 9910564 Query 78520 TATGCTGAGGTCTTTCAACCGTCTT-ATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 | ||||| |||||||| | || ||| || || || || | | ||| || || | Sbjct 9910563 TTTGCTGTGGTCTTTCGA-CGACTTCCTTGTTGATCTTGAGAAGGTAGGAACGCTCGAGC 9910505 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTA 78619 || || || || || ||| |||| || | ||||| ||||| Sbjct 9910504 GTCTTGAATCCGAAGTAGGTGTAAGAGTAATCTCTGTCGTA 9910464 Score = 154 bits (170), Expect = 2e-32 Identities = 317/468 (68%), Gaps = 5/468 (1%) Strand=Plus/Minus Query 76772 CTTATCCAATGTAAACTGAATTGGAGAAGAT-GCGGGTTTTGTACGTAGATAGTACATAC 76830 |||||||| ||||| |||| || | || || || || ||||| | |||||||| | Sbjct 9912589 CTTATCCACGGTAAATTGAAC-GGCGTTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 9912531 Query 76831 CAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAG 76890 |||| || || ||| ||||||||||||| ||||| ||| | || || || | Sbjct 9912530 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCGGCGTAGCTTG 9912471 Query 76891 GATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCG 76950 | | ||| || ||||| || | ||||| |||||||||||| ||||| | ||| || | Sbjct 9912470 GCTTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCACGATCGGCAG 9912411 Query 76951 CCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATAT 77010 |||| | ||||| ||| || | || ||||| | || | ||| | ||||||| Sbjct 9912410 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGCTCCTTGATAT 9912351 Query 77011 CATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTA 77067 | ||||||| || | || ||||| || ||| | | || | ||||| | Sbjct 9912350 CGTCTGGAATTCCTGGGATGTTCTGAATCGATCCATTGTTGGCAATGAGGCGGTTCTTCA 9912291 Query 77068 TATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTT 77127 | ||||| |||||||| ||||| ||| | | || | || || || || |||| Sbjct 9912290 TCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGACGATTT 9912231 Query 77128 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 77187 | || || || || | || | ||||| ||| || || ||| ||||| || | |||| Sbjct 9912230 GGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAATCGATT 9912171 Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235 | |||||||| | || ||||| || |||||||||||||| || |||| Sbjct 9912170 CGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAGCCA 9912123 Score = 98.7 bits (108), Expect = 1e-15 Identities = 286/433 (66%), Gaps = 7/433 (2%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 ||||| | |||||| || ||||| ||| ||||||| | || ||||| ||||||||| Sbjct 9911956 GATCCCTCATATGTAGAGTATGGTCCATCTCTTTCAGCCAACTCGCAACTAGCTTCCAAT 9911897 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT-TGTGCT-TCAATACTAT 77472 || |||| || || || ||||| || |||| ||||||||| || || | | | | | Sbjct 9911896 GCAGCGTAGTAGATGGTCTCGAAGATTCTCTTGTTGAGATCTCTGGCCTGTGGAGA-TGT 9911838 Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAG 77532 || |||||| | | | || ||| || || | ||| |||||||| | ||| || | Sbjct 9911837 -GAATGGATAACGCATCAACATGAAGCAGTCAGCGAGTCCTTGAACTCCGAGACCGATTG 9911779 Query 77533 GTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAA 77592 | | ||| | | | || || | ||| ||| ||| |||||||| || | ||| || | Sbjct 9911778 GACGATGGCGCATGTTCGAGTTGCGAGCCTCTTCAATTGGATAATAGTTGACGTCAATGA 9911719 Query 77593 TTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATC 77652 | || || ||||| | | || || ||| || || || | ||| || || Sbjct 9911718 TCTTGTTCAGATTCTTTGTTATGACCTTGGTCACCTCAGCGAGCTTGACAAAGTCGAACT 9911659 Query 77653 TTCCATC--TA-TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCT 77709 || || || | || || ||||||||| ||||| || ||||| ||||| || |||| Sbjct 9911658 TTTTGTCGTTAGTCACGAAACGGTTCAAAGCAATAGAAGCGAGATTGCAAACAGCAACCT 9911599 Query 77710 CATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCA 77769 | | | | || | || ||||| || || | || || |||||||| |||| Sbjct 9911598 CGTCTGGAGCAGAGTACTCGATAATCTCAGTGCACAAGTTGGAGCACTTGATAGTTCCCA 9911539 Query 77770 GATTTTGTTGGTT 77782 ||||| ||||| Sbjct 9911538 AGTTTTGCTGGTT 9911526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665613206880